RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ISG20Q96AZ6 181 aaKnown RBP17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 LMBRD1Q9NUN5 540 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 CELSR3Q9NYQ7 3312 aa17.85■□□□□ 0.45
SHKBP1-223ENST00000600552 ANKRD62A6NC57 917 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 KDELR3O43731 214 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 AP1G1O43747 822 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 TMCC1O94876 653 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 GSRP00390 522 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 MPOP05164 745 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 UNGP13051 313 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 XPAP23025 273 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 EPHB2P29323 1055 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 ACTN2P35609 894 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 DUSP3P51452 185 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 THOP1P52888 689 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 RHOAP61586 193 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 NRG1Q02297 640 aaPredicted RBP17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 UBXN1Q04323 297 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 PTP4A2Q12974 167 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 C1orf61Q13536 156 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 EFHC2Q5JST6 749 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 DNAJC24Q6P3W2 148 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 SASS6Q6UVJ0 657 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 GDPD4Q6W3E5 623 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 PARGQ86W56 976 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 FAM174AQ8TBP5 190 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 IFI44Q8TCB0 444 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 WRAP53Q9BUR4 548 aaKnown RBP17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 C1QTNF2Q9BXJ5 285 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 KLC2Q9H0B6 622 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 SYNDIG1Q9H7V2 258 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 EVA1BQ9NVM1 165 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 KLF15Q9UIH9 416 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 SIK3Q9Y2K2 1263 aa17.84■□□□□ 0.45
SHKBP1-223ENST00000600552 SPTY2D1-AS1A0A0U1RR47 76 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 SPINT1O43278 529 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 CCP110O43303 1012 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 AQP9O43315 295 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 USP12O75317 370 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 CSO75390 466 aaKnown RBP17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 CSF2P04141 144 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 CALB1P05937 261 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 RAD51Q06609 339 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 EFL1Q7Z2Z2 1120 aaKnown RBP17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 RBFAQ8N0V3 343 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 CXorf40AQ8TE69 158 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 RFFLQ8WZ73 363 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 CENPIQ92674 756 aaPredicted RBP17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 RAB7BQ96AH8 199 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 IFT43Q96FT9 208 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 HMCESQ96FZ2 354 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 EXOC2Q96KP1 924 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 GDAP1L1Q96MZ0 367 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 DEPDC7Q96QD5 511 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 KLF6Q99612 283 aaPredicted RBP17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 IL12RB2Q99665 862 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 NCAPGQ9BPX3 1015 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 DUSP23Q9BVJ7 150 aa17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 TCEAL2Q9H3H9 227 aaPredicted RBP17.83■□□□□ 0.44
SHKBP1-223ENST00000600552 INSIG1O15503 277 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 IGSF6O95976 241 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 PRB1P04280 392 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 NME1P15531 152 aaKnown RBP17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 ADKP55263 362 aaKnown RBP17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 GABREP78334 506 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 FAXCQ5TGI0 409 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 DCUN1D2Q6PH85 259 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 FOXR1Q6PIV2 292 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 PLPP6Q8IY26 295 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 FCRL3Q96P31 734 aaPredicted RBP17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 MCEEQ96PE7 176 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 LGMNQ99538 433 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 AGPAT1Q99943 283 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 OSBPL1AQ9BXW6 950 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 NEU3Q9UQ49 428 aa17.82■□□□□ 0.44
SHKBP1-223ENST00000600552 LY6G6EA0A0G2JKS1 128 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 SIGLEC16A6NMB1 481 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 TMCO5BA8MYB1 307 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 RASA4BC9J798 803 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 MUSKO15146 869 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 RASA4O43374 803 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 TM7SF2O76062 418 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 RPL7AP62424 266 aaKnown RBP17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 EIF2B5Q13144 721 aaKnown RBP17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 TBC1D25Q3MII6 688 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 PRRT3Q5FWE3 981 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 GUSBP11Q6P575 273 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 PHF13Q86YI8 300 aaPredicted RBP17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 PAF1Q8N7H5 531 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 RTL3Q8N8U3 475 aaKnown RBP17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 C3orf20Q8ND61 904 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 NTAN1Q96AB6 310 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 ARHGEF26Q96DR7 871 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 LENG8Q96PV6 779 aaPredicted RBP17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 TTYH3Q9C0H2 523 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 NOL6Q9H6R4 1146 aaKnown RBP17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 MBNL1Q9NR56 388 aaKnown RBP17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 WDR70Q9NW82 654 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 GPATCH2LQ9NWQ4 482 aa17.81■□□□□ 0.44
SHKBP1-223ENST00000600552 SPASTQ9UBP0 616 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms