RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	NDE1	Q9NXR1	346 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZNF180	Q9UJW8	692 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ATP11B	Q9Y2G3	1177 aa		11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	HBS1L	Q9Y450	684 aa	Known RBP	11.76	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CAPN14	A8MX76	684 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063		E7ENQ6	273 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063		E9PBE3	544 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SPTLC1	O15269	473 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZBTB14	O43829	449 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ENDOD1	O94919	500 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	APOE	P02649	317 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	HEXB	P07686	556 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ERVK-10	P10266	1014 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	OCRL	Q01968	901 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	TAF12	Q16514	161 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	FAM187B	Q17R55	369 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	KDELC1	Q6UW63	502 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZNF534	Q76KX8	674 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	FAM131B	Q86XD5	332 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	TMPRSS6	Q8IU80	811 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	PHTF2	Q8N3S3	785 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	LPP	Q93052	612 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SDCCAG3	Q96C92	435 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZPBP	Q9BS86	351 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RHBDL2	Q9NX52	303 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	MOSPD1	Q9UJG1	213 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ARHGAP10	A1A4S6	786 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	NEMP1	O14524	444 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	TPP1	O14773	563 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	APOL1	O14791	398 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	LIN7A	O14910	233 aa	Predicted RBP	11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	OR6B1	O95007	311 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	LYN	P07948	512 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CYP2F1	P24903	491 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	HOXC12	P31275	282 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RXRG	P48443	463 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RBP5	P82980	135 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RUNX1T1	Q06455	604 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CDC16	Q13042	620 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SFT2D3	Q587I9	215 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	FAM26D	Q5JW98	314 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	LIN54	Q6MZP7	749 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	LCLAT1	Q6UWP7	414 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	OTOP3	Q7RTS5	596 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CHSY1	Q86X52	802 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	FAM26E	Q8N5C1	309 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZNF398	Q8TD17	642 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	C19orf43	Q9BQ61	176 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	TUBA1C	Q9BQE3	449 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	NDEL1	Q9GZM8	345 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ASB7	Q9H672	318 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SCPEP1	Q9HB40	452 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	11.75	□□□□□ -0.53	4e-8	■□□□□ 8
CDK5RAP3-231	ENST00000584063	WDR35	Q9P2L0	1181 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CDY2A	Q9Y6F7	541 aa		11.75	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	MBLAC1	A4D2B0	266 aa	Predicted RBP	11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CLDN5	O00501	218 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	TOMM70	O94826	608 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	DDHD2	O94830	711 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CYBA	P13498	195 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	GOT1	P17174	413 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ACAT1	P24752	427 aa	Known RBP	11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	PEX2	P28328	305 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	AFF1	P51825	1210 aa	Known RBP	11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ASPH	Q12797	758 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	DLG2	Q15700	870 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	KCNT2	Q6UVM3	1135 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	C10orf107	Q8IVU9	208 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	MARK4	Q96L34	752 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	APOL2	Q9BQE5	337 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	MTG1	Q9BT17	334 aa	Predicted RBP	11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ADNP	Q9H2P0	1102 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CAB39L	Q9H9S4	337 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SSU72	Q9NP77	194 aa	Known RBP	11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	TRMT13	Q9NUP7	481 aa	Known RBP	11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	PTBP2	Q9UKA9	531 aa	Known RBP	11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	PCDHGB4	Q9UN71	923 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	PCDHGB5	Q9Y5G0	923 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SLC4A7	Q9Y6M7	1214 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CACNB4	O00305	520 aa	Predicted RBP	11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	CDK2AP1	O14519	115 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SEPT4	O43236	478 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	DCX	O43602	365 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	OR5F1	O95221	314 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	PGM3	O95394	542 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	AMH	P03971	560 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	BPGM	P07738	259 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SPATA31D3	P0C874	917 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	VAV1	P15498	845 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SDC4	P31431	198 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	PTGS2	P35354	604 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	AQP4	P55087	323 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	RFTN1	Q14699	578 aa	Predicted RBP	11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	TEX44	Q53QW1	395 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ATG16L1	Q676U5	607 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SPATA31D4	Q6ZUB0	917 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	SPART	Q8N0X7	666 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZNF565	Q8N9K5	539 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	ZFAND2B	Q8WV99	257 aa		11.74	□□□□□ -0.53
CDK5RAP3-231	ENST00000584063	KCTD15	Q96SI1	283 aa	Predicted RBP	11.74	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms