RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 OR4D9Q8NGE8 314 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 PNPLA2Q96AD5 504 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 ALG14Q96F25 216 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 PPP1R16AQ96I34 528 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 ASF1BQ9NVP2 202 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 RCOR3Q9P2K3 495 aaPredicted RBP16.48■□□□□ 0.23
VPS53-218ENST00000575207 CROTQ9UKG9 612 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 PCDHGB7Q9Y5F8 929 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 KLF2Q9Y5W3 355 aaPredicted RBP16.48■□□□□ 0.23
VPS53-218ENST00000575207 JMJD1CQ15652 2540 aa16.48■□□□□ 0.23
VPS53-218ENST00000575207 COL6A5A8TX70 2615 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 FN1P02751 2386 aaKnown RBP16.47■□□□□ 0.23
VPS53-218ENST00000575207 FRMD3A2A2Y4 597 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 EIF3DO15371 548 aaKnown RBP eCLIP16.47■□□□□ 0.23
VPS53-218ENST00000575207 LRRTM2O43300 516 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 ZG16O60844 167 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 STK17BO94768 372 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 RASGRP1O95267 797 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 THRAP10827 490 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 CD99P14209 185 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 AP3M2P53677 418 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 TBX4P57082 545 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 OR1D5P58170 312 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 CENPCQ03188 943 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 NR1D2Q14995 579 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 ALG11Q2TAA5 492 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 SLC6A19Q695T7 634 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 CDH24Q86UP0 819 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 SFTPA2Q8IWL1 248 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 ESX1Q8N693 406 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 TAF4BQ92750 862 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 CCDC114Q96M63 670 aa16.47■□□□□ 0.23
VPS53-218ENST00000575207 RBM15Q96T37 977 aaKnown RBP eCLIP16.47■□□□□ 0.23
VPS53-218ENST00000575207 PRICKLE3O43900 615 aaPredicted RBP16.46■□□□□ 0.23
VPS53-218ENST00000575207 DPM1O60762 260 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 MAP3K6O95382 1288 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 BPIP17213 487 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 NFKBIAP25963 317 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 CD1CP29017 333 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 MAN1A1P33908 653 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 ITGA1P56199 1179 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 CLDN10P78369 228 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 ART3Q13508 389 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 RILPL1Q5EBL4 403 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 CEACAM20Q6UY09 585 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 ZNF438Q7Z4V0 828 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 FAM129CQ86XR2 697 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 SPATA3Q8NHX4 192 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 TSACCQ96A04 125 aaPredicted RBP16.46■□□□□ 0.23
VPS53-218ENST00000575207 FCRL2Q96LA5 508 aaPredicted RBP16.46■□□□□ 0.23
VPS53-218ENST00000575207 MDFIQ99750 246 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 HS3ST2Q9Y278 367 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 ZNF451Q9Y4E5 1061 aa16.46■□□□□ 0.23
VPS53-218ENST00000575207 CDC14CA4D256 554 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 TSPAN6O43657 245 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 RPN1P04843 607 aaKnown RBP16.45■□□□□ 0.22
VPS53-218ENST00000575207 SRCP12931 536 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 HOXD13P35453 343 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 CASP4P49662 377 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 PEX5P50542 639 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 MC2RQ01718 297 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 SRSF11Q05519 484 aaKnown RBP16.45■□□□□ 0.22
VPS53-218ENST00000575207 SQSTM1Q13501 440 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 ARSIQ5FYB1 569 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 CXorf57Q6NSI4 855 aaKnown RBP16.45■□□□□ 0.22
VPS53-218ENST00000575207 ZNF295-AS1Q8N0V1 137 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 LGI2Q8N0V4 545 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 CHST14Q8NCH0 376 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 FAM46DQ8NEK8 389 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 PPP1R9BQ96SB3 815 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 CTRCQ99895 268 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 RTTNQ86VV8 2226 aa16.45■□□□□ 0.22
VPS53-218ENST00000575207 ZW10O43264 779 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 ASS1P00966 412 aaKnown RBP16.44■□□□□ 0.22
VPS53-218ENST00000575207 ALDH4A1P30038 563 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 DLSTP36957 453 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 HPS6Q86YV9 775 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 CCAR2Q8N163 923 aaKnown RBP16.44■□□□□ 0.22
VPS53-218ENST00000575207 RBMXL3Q8N7X1 1067 aaKnown RBP16.44■□□□□ 0.22
VPS53-218ENST00000575207 XXYLT1Q8NBI6 393 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 PLEKHO2Q8TD55 490 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 BARD1Q99728 777 aaKnown RBP16.44■□□□□ 0.22
VPS53-218ENST00000575207 FEM1AQ9BSK4 669 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 CYP3A43Q9HB55 503 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 FBXO8Q9NRD0 319 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 AGPAT3Q9NRZ7 376 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 COPG2Q9UBF2 871 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 IL36AQ9UHA7 158 aa16.44■□□□□ 0.22
VPS53-218ENST00000575207 ARHGEF17Q96PE2 2063 aaPredicted RBP16.44■□□□□ 0.22
VPS53-218ENST00000575207 MN1Q10571 1320 aaPredicted RBP16.44■□□□□ 0.22
VPS53-218ENST00000575207 FAM221AA4D161 298 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 A6NCN8 305 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 ZSCAN5CA6NGD5 496 aaPredicted RBP16.43■□□□□ 0.22
VPS53-218ENST00000575207 TMEM110-MUSTN1A8MSY1 372 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 LEFTY1O75610 366 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 CD2BP2O95400 341 aaKnown RBP16.43■□□□□ 0.22
VPS53-218ENST00000575207 CYP2J2P51589 502 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 KRTAP10-9P60411 292 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 DPYDQ12882 1025 aa16.43■□□□□ 0.22
VPS53-218ENST00000575207 SPOPLQ6IQ16 392 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms