RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 MAP7D2Q96T17 732 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 PCYT2Q99447 389 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ITPAQ9BY32 194 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 RAB34Q9BZG1 259 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 TWSG1Q9GZX9 223 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 C12orf65Q9H3J6 166 aaKnown RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 ADPRHL2Q9NX46 363 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 ING3Q9NXR8 418 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 NCDNQ9UBB6 729 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 SH3BGRL2Q9UJC5 107 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 USP15Q9Y4E8 981 aaPredicted RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 EPN1Q9Y6I3 576 aaPredicted RBP6.37□□□□□ -1.39
VPS53-212ENST00000572259 SQORQ9Y6N5 450 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 MICAL3Q7RTP6 2002 aa6.37□□□□□ -1.39
VPS53-212ENST00000572259 TANC1Q9C0D5 1861 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 FAM171A2A8MVW0 826 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 SLC37A4O43826 429 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 TRIM13O60858 407 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 USP1O94782 785 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 AMHP03971 560 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 JUNP05412 331 aaKnown RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 TYRP14679 529 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 ABCD3P28288 659 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 GJB2P29033 226 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 EEF1DP29692 281 aaKnown RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 ACSL1P33121 698 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 MCM7P33993 719 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 PRKAA2P54646 552 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 RAD23AP54725 363 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 RAC3P60763 192 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 PPP2CBP62714 309 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 PPP2CAP67775 309 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 MRPS6P82932 125 aaKnown RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 PRKCEQ02156 737 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 NFYCQ13952 458 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 ADIPOQQ15848 244 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 TBR1Q16650 682 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 KYNUQ16719 465 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 RNF151Q2KHN1 245 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 ZNF674Q2M3X9 581 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 TRIM71Q2Q1W2 868 aaKnown RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 NAA35Q5VZE5 725 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 ATG16L1Q676U5 607 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 EFCAB12Q6NXP0 572 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 CRTC1Q6UUV9 634 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 PXKQ7Z7A4 578 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 CPLX4Q7Z7G2 160 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 CCDC117Q8IWD4 279 aaPredicted RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 DEFB123Q8N688 67 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 ERMNQ8TAM6 284 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 NEK9Q8TD19 979 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 DENND1AQ8TEH3 1009 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 PIGOQ8TEQ8 1089 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 BICD1Q96G01 975 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 RBM18Q96H35 190 aaKnown RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 CTAGE1Q96RT6 745 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 UHRF1Q96T88 793 aaPredicted RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 FTHL17Q9BXU8 183 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 IFIH1Q9BYX4 1025 aaKnown RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 TRIM5Q9C035 493 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 FAM49AQ9H0Q0 323 aaPredicted RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 TTC12Q9H892 705 aaPredicted RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 SLC28A3Q9HAS3 691 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 SARS2Q9NP81 518 aaKnown RBP6.36□□□□□ -1.39
VPS53-212ENST00000572259 KCNMB3Q9NPA1 279 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 TLR9Q9NR96 1032 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 TBCCD1Q9NVR7 557 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 PNPOQ9NVS9 261 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 SCOCQ9UIL1 159 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 TRPV2Q9Y5S1 764 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 TTC3P53804 2025 aa6.36□□□□□ -1.39
VPS53-212ENST00000572259 IGSF9BQ9UPX0 1349 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 LAD1O00515 517 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 SGTAO43765 313 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 EDIL3O43854 480 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 GJB3O75712 270 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 ACTL6BO94805 426 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 CHRNA1P02708 482 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 AFPP02771 609 aaKnown RBP6.35□□□□□ -1.39
VPS53-212ENST00000572259 MT-ND5P03915 603 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 CLEC3BP05452 202 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 CNPP09543 421 aaKnown RBP6.35□□□□□ -1.39
VPS53-212ENST00000572259 VSIG10L2P0DP72 767 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 U2AF2P26368 475 aaKnown RBP eCLIP6.35□□□□□ -1.39
VPS53-212ENST00000572259 ECHS1P30084 290 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 WNT3AP56704 352 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 RPS16P62249 146 aaKnown RBP6.35□□□□□ -1.39
VPS53-212ENST00000572259 DUSP2Q05923 314 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 PPP3CAQ08209 521 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 ST3GAL1Q11201 340 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 IFT88Q13099 833 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 ACAP1Q15027 740 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 C3orf38Q5JPI3 329 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 MARCH8Q5T0T0 291 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 NCAPH2Q6IBW4 605 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 SLC22A25Q6T423 547 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 KLHL24Q6TFL4 600 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 C1QL4Q86Z23 238 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 LURAP1LQ8IV03 231 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms