RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 SESN2P58004 480 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 TFAMQ00059 246 aaKnown RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 PTK2BQ14289 1009 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 XKR3Q5GH77 459 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 MTX3Q5HYI7 312 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 TMEM198Q66K66 360 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 SEL1L3Q68CR1 1132 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 CPNE9Q8IYJ1 553 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 DDHD1Q8NEL9 900 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 KCNN1Q92952 543 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 PLEKHA8Q96JA3 519 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 HNRNPABQ99729 332 aaKnown RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 NPAS2Q99743 824 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 GATA5Q9BWX5 397 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 ANKRD60Q9BZ19 345 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 XYLT2Q9H1B5 865 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 ADAMTS10Q9H324 1103 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 C20orf96Q9NUD7 363 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 PIH1D1Q9NWS0 290 aaKnown RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 TUBA8Q9NY65 449 aaPredicted RBP8.67□□□□□ -1.02
HPS4-206ENST00000439453 ADA2Q9NZK5 511 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 CDC14AQ9UNH5 594 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 UNC80Q8N2C7 3258 aa8.67□□□□□ -1.02
HPS4-206ENST00000439453 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 TMX2-CTNND1H3BSU7 103 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 H2AFYO75367 372 aaKnown RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 ATE1O95260 518 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 STAMBPO95630 424 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 PGAM1P18669 254 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 RPL10P27635 214 aaKnown RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 GP5P40197 560 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 CA9Q16790 459 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 BOLA3Q53S33 107 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 NXNQ6DKJ4 435 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 FAM109BQ6ICB4 259 aaPredicted RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 DCLK2Q8N568 766 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 FAM47BQ8NA70 645 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 LINC01599Q8WXQ3 324 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 ASB9Q96DX5 294 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 FAM167AQ96KS9 214 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 MARK4Q96L34 752 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 RAP2CQ9Y3L5 183 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 SNX13Q9Y5W8 968 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 MYO18AQ92614 2054 aaKnown RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 TRIM64CA6NLI5 447 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 C9IYK1 514 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 M0QYV0 167 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 PIK3R2O00459 728 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 XPOTO43592 962 aaKnown RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 ADAM23O75077 832 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 MAFO75444 373 aaPredicted RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 ZBTB11O95625 1053 aaPredicted RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 LTFP02788 710 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 FUCA1P04066 466 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 ERVK-10P10266 1014 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 MLNP12872 115 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 THPOP40225 353 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 RPL14P50914 215 aaKnown RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 CLCN3P51790 818 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 SLC15A3Q8IY34 581 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 CENPSQ8N2Z9 138 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 CNTD1Q8N815 330 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 ARNTL2Q8WYA1 636 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 MOCOSQ96EN8 888 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 CIB1Q99828 191 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 ZBTB26Q9HCK0 441 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 ACSS2Q9NR19 701 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 IPO11Q9UI26 975 aaKnown RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 ITGB1BP2Q9UKP3 347 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 HTR3EA5X5Y0 456 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 TCAF2A6NFQ2 919 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 GRID2O43424 1007 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 GRAP2O75791 330 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 MAGEA12P43365 314 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 CDH8P55286 799 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 GBE1Q04446 702 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 BFSP2Q13515 415 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 TRIM25Q14258 630 aaKnown RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 GRTP1Q5TC63 336 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 OR6B2Q6IFH4 312 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 TAF2Q6P1X5 1199 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 LYSMD3Q7Z3D4 306 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 TDHQ8IZJ6 230 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 CRIPAKQ8N1N5 446 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 LRRC71Q8N4P6 559 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 TBC1D15Q8TC07 691 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 HERVK_113Q902F9 699 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 PPP1R10Q96QC0 940 aaKnown RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 CPNE1Q99829 537 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 TCHPQ9BT92 498 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 PCDHAC1Q9H158 963 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 AGO3Q9H9G7 860 aaKnown RBP8.66□□□□□ -1.02
HPS4-206ENST00000439453 CDYLQ9Y232 598 aa8.66□□□□□ -1.02
HPS4-206ENST00000439453 ANK1P16157 1881 aa8.65□□□□□ -1.02
HPS4-206ENST00000439453 A0A1W2PPC1 479 aa8.65□□□□□ -1.02
HPS4-206ENST00000439453 GIPC1O14908 333 aa8.65□□□□□ -1.02
HPS4-206ENST00000439453 CTSHP09668 335 aa8.65□□□□□ -1.02
HPS4-206ENST00000439453 CYP2F1P24903 491 aa8.65□□□□□ -1.02
HPS4-206ENST00000439453 RFC2P35250 354 aa8.65□□□□□ -1.02
HPS4-206ENST00000439453 ARL2P36404 184 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms