RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 ACMSDQ8TDX5 336 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 RBBP8Q99708 897 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 OSBPL11Q9BXB4 747 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 EPS8L2Q9H6S3 715 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 MKS1Q9NXB0 559 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 ST14Q9Y5Y6 855 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 FUOMA2VDF0 154 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 GPR25O00155 361 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 CILPO75339 1184 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 DDHD2O94830 711 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 PCYT1AP49585 367 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 TIFABQ6ZNK6 161 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 ZNF567Q8N184 647 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 CXorf38Q8TB03 319 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 UPF3AQ9H1J1 476 aaKnown RBP13.33□□□□□ -0.28
MSH6-214ENST00000616033 SPON1Q9HCB6 807 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 SMOXQ9NWM0 555 aa13.33□□□□□ -0.28
MSH6-214ENST00000616033 RBBP6Q7Z6E9 1792 aaKnown RBP13.32□□□□□ -0.28
MSH6-214ENST00000616033 SIPA1L1O43166 1804 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 TRIM64CA6NLI5 447 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 C9IYK1 514 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 WNT10BO00744 389 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 MRASO14807 208 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 CLOCKO15516 846 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 STAG3L1P0CL83 205 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 NMBRP28336 390 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 LRPAP1P30533 357 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 CD97P48960 835 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 GJA9P57773 515 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 LSM3P62310 102 aaKnown RBP13.32□□□□□ -0.28
MSH6-214ENST00000616033 MPP1Q00013 466 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 PRKCQQ04759 706 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 CSHL1Q14406 222 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 TBCBQ99426 244 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 EFHD1Q9BUP0 239 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 FTHL17Q9BXU8 183 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 KLHL25Q9H0H3 589 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 VPS33BQ9H267 617 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 ZBTB26Q9HCK0 441 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 SCN9AQ15858 1988 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 NR5A2O00482 541 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 FAM189A1O60320 539 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 GCATO75600 419 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 NCK1P16333 377 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 TCEA1P23193 301 aaKnown RBP13.32□□□□□ -0.28
MSH6-214ENST00000616033 SOWAHAQ2M3V2 549 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 NCBP2-AS2Q69YL0 99 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 NANOGP8Q6NSW7 305 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 TTC30AQ86WT1 665 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 DHFR2Q86XF0 187 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 SIX6OS1Q8N1H7 587 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 CELF6Q96J87 481 aaKnown RBP13.32□□□□□ -0.28
MSH6-214ENST00000616033 MAML3Q96JK9 1138 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 CPNE1Q99829 537 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 OSBPL10Q9BXB5 764 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 NT5C1AQ9BXI3 368 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 SLC38A7Q9NVC3 462 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 PIM2Q9P1W9 311 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 CORINQ9Y5Q5 1042 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 ACOT8O14734 319 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 PIM1P11309 404 aaPredicted RBP13.32□□□□□ -0.28
MSH6-214ENST00000616033 VDRP11473 427 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 MTHFD1P11586 935 aaKnown RBP13.32□□□□□ -0.28
MSH6-214ENST00000616033 TPSB2P20231 275 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 CXCR3P49682 368 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 PIGFQ07326 219 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 TPSAB1Q15661 275 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 GRTP1Q5TC63 336 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 HMBOX1Q6NT76 420 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 CTU1Q7Z7A3 348 aaKnown RBP13.32□□□□□ -0.28
MSH6-214ENST00000616033 PIGZQ86VD9 579 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 VPS50Q96JG6 964 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 RANBP9Q96S59 729 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 DGCR6LQ9BY27 220 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 DPEP3Q9H4B8 488 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 ZFYVE28Q9HCC9 887 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 PALMDQ9NP74 551 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 OXSMQ9NWU1 459 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 PLK2Q9NYY3 685 aa13.32□□□□□ -0.28
MSH6-214ENST00000616033 PPEF2O14830 753 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 PORP16435 677 aaPredicted RBP13.31□□□□□ -0.28
MSH6-214ENST00000616033 MZF1P28698 734 aaPredicted RBP13.31□□□□□ -0.28
MSH6-214ENST00000616033 CDH13P55290 713 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 TPD52P55327 224 aaPredicted RBP13.31□□□□□ -0.28
MSH6-214ENST00000616033 CDK18Q07002 472 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 SEMA5AQ13591 1074 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 ADRM1Q16186 407 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 TRIM16LQ309B1 348 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 ARHGAP17Q68EM7 881 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 Q6ZNX1 250 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 TICAM1Q8IUC6 712 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 PBXIP1Q96AQ6 731 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 MRPL45Q9BRJ2 306 aaKnown RBP13.31□□□□□ -0.28
MSH6-214ENST00000616033 CDT1Q9H211 546 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 CXCL16Q9H2A7 254 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 POMKQ9H5K3 350 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 ATAD3AQ9NVI7 634 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 DSEQ9UL01 958 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 SNX10Q9Y5X0 201 aa13.31□□□□□ -0.28
MSH6-214ENST00000616033 PTGDR2Q9Y5Y4 395 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms