RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 CLSTN3Q9BQT9 956 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ZYG11BQ9C0D3 744 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 LRRC40Q9H9A6 602 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 SMPD4Q9NXE4 827 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 SCOCQ9UIL1 159 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ZNF180Q9UJW8 692 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 XIRP2A4UGR9 3374 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 TM9SF1O15321 606 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 HOXA2O43364 376 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 CXCL10P02778 98 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ITGA2BP08514 1039 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 CSF2RAP15509 400 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ZNF683Q8IZ20 524 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 NCSTNQ92542 709 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 CDKL2Q92772 493 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 BHMTQ93088 406 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ALKBH8Q96BT7 664 aaKnown RBP11.85□□□□□ -0.51
SHMT2-212ENST00000554467 MIPEPQ99797 713 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 TBL1YQ9BQ87 522 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 VCXQ9H320 206 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ZNF510Q9Y2H8 683 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 MICAL3Q7RTP6 2002 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 COL4A4P53420 1690 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-212ENST00000554467 H7C4K7 107 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 CCL22O00626 93 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ETS2P15036 469 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 PLD1Q13393 1074 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 IHHQ14623 411 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 TRIP4Q15650 581 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-212ENST00000554467 TAF1BQ53T94 588 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-212ENST00000554467 SNX30Q5VWJ9 437 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ANKRD33Q7Z3H0 272 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 MTDHQ86UE4 582 aaKnown RBP11.85□□□□□ -0.51
SHMT2-212ENST00000554467 LGI2Q8N0V4 545 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ARHGAP18Q8N392 663 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 WBP2Q969T9 261 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 FSD1LQ9BXM9 530 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 UNKQ9C0B0 810 aaKnown RBP11.85□□□□□ -0.51
SHMT2-212ENST00000554467 VPS11Q9H270 941 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 SSU72Q9NP77 194 aaKnown RBP11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ACSS2Q9NR19 701 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 IL37Q9NZH6 218 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 ATXN10Q9UBB4 475 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 HSFX1Q9UBD0 423 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 MARCOQ9UEW3 520 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-212ENST00000554467 LRCH1Q9Y2L9 728 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 PLLPQ9Y342 182 aa11.85□□□□□ -0.51
SHMT2-212ENST00000554467 A0A0D9SEW6 157 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 KITP10721 976 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 OR1E1P30953 314 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 CD86P42081 329 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 SLC18A1P54219 525 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 DSC2Q02487 901 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 ELAVL2Q12926 359 aaKnown RBP11.84□□□□□ -0.51
SHMT2-212ENST00000554467 PDE1CQ14123 709 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-212ENST00000554467 TSNAXIP1Q2TAA8 658 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 MARK2Q7KZI7 788 aaKnown RBP11.84□□□□□ -0.51
SHMT2-212ENST00000554467 RNF135Q8IUD6 432 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 DENND1CQ8IV53 801 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 ATP6V0D2Q8N8Y2 350 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 PAWRQ96IZ0 340 aaKnown RBP11.84□□□□□ -0.51
SHMT2-212ENST00000554467 BTN2A3PQ96KV6 586 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 SP110Q9HB58 689 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 GREB1Q4ZG55 1949 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 DOCK4Q8N1I0 1966 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 FAM92AA1XBS5 289 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 TSPAN3O60637 253 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 ATP6V1G1O75348 118 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 GSTA2P09210 222 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 SLC6A4P31645 630 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 ZNF135P52742 658 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-212ENST00000554467 RPS24P62847 133 aaKnown RBP11.84□□□□□ -0.51
SHMT2-212ENST00000554467 CDH17Q12864 832 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 FYB2Q5VWT5 728 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 KCNMB4Q86W47 210 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 OR52K2Q8NGK3 314 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 TSGA13Q96PP4 275 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 CYP2S1Q96SQ9 504 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 VAT1Q99536 393 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 IL12RB2Q99665 862 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 TMEM175Q9BSA9 504 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 TXLNGQ9NUQ3 528 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 SAGE1Q9NXZ1 904 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 ZFP69BQ9UJL9 534 aa11.84□□□□□ -0.51
SHMT2-212ENST00000554467 MTO1Q9Y2Z2 717 aaKnown RBP11.84□□□□□ -0.51
SHMT2-212ENST00000554467 SZT2Q5T011 3432 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 C2orf78A6NCI8 922 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 SLC2A3P11169 496 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 KCNA4P22459 653 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 CCNFP41002 786 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 PLXNA3P51805 1871 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 RPL10AP62906 217 aaKnown RBP11.83□□□□□ -0.51
SHMT2-212ENST00000554467 ESRP1Q6NXG1 681 aaKnown RBP11.83□□□□□ -0.51
SHMT2-212ENST00000554467 OTOP2Q7RTS6 562 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 DCLK2Q8N568 766 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 TSSK1BQ9BXA7 367 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 SPATA16Q9BXB7 569 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 CLIC5Q9NZA1 410 aa11.83□□□□□ -0.51
SHMT2-212ENST00000554467 VAPBO95292 243 aa11.83□□□□□ -0.52
SHMT2-212ENST00000554467 PEX11BO96011 259 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms