RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RAD9BQ6WBX8 426 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 VPS36Q86VN1 386 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 AHI1Q8N157 1196 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 HSPH1Q92598 858 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 MRFAP1L1Q96HT8 127 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 VCPIP1Q96JH7 1222 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 CCDC42Q96M95 316 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 HAPLN3Q96S86 360 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 SLC2A11Q9BYW1 496 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 SEMA4CQ9C0C4 833 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 MKRN2Q9H000 416 aaKnown RBP14.21□□□□□ -0.13
CLN3-235ENST00000568497 MUC3BQ9H195 1237 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 CTTNBP2NLQ9P2B4 639 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 ERVW-1Q9UQF0 538 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 OR51B4Q9Y5P0 310 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 SIN3BO75182 1162 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 H2AFZP0C0S5 128 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 TNNT1P13805 278 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 CCT8P50990 548 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 IL9RQ01113 521 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 RHDQ02161 417 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 SRSF1Q07955 248 aaKnown RBP eCLIP14.2□□□□□ -0.14
CLN3-235ENST00000568497 KIF19Q2TAC6 998 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 PPP6R3Q5H9R7 873 aaPredicted RBP14.2□□□□□ -0.14
CLN3-235ENST00000568497 MPP7Q5T2T1 576 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 LRRC31Q6UY01 552 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 H2AFVQ71UI9 128 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 PRICKLE2Q7Z3G6 844 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 FAM124AQ86V42 546 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 CNGA4Q8IV77 575 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 SPACA3Q8IXA5 215 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 ACRBPQ8NEB7 543 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 ZNF564Q8TBZ8 553 aaPredicted RBP14.2□□□□□ -0.14
CLN3-235ENST00000568497 WFIKKN2Q8TEU8 576 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 LRRN4Q8WUT4 740 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 FGF11Q92914 225 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 IQCDQ96DY2 449 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 CELF6Q96J87 481 aaKnown RBP14.2□□□□□ -0.14
CLN3-235ENST00000568497 LGMNQ99538 433 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 FEM1AQ9BSK4 669 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 NOL6Q9H6R4 1146 aaKnown RBP14.2□□□□□ -0.14
CLN3-235ENST00000568497 USP36Q9P275 1121 aaKnown RBP14.2□□□□□ -0.14
CLN3-235ENST00000568497 VPS28Q9UK41 221 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 AP4E1Q9UPM8 1137 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 SNX11Q9Y5W9 270 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 PTPN13Q12923 2485 aa14.2□□□□□ -0.14
CLN3-235ENST00000568497 COL5A1P20908 1838 aaPredicted RBP14.2□□□□□ -0.14
CLN3-235ENST00000568497 UNC79Q9P2D8 2635 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 CKAP5Q14008 2032 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 IGLV3-10A0A075B6K4 115 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 RCCD1A6NED2 376 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 METTL12A8MUP2 240 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 KCNK3O14649 394 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 SMAD6O43541 496 aaKnown RBP14.19□□□□□ -0.14
CLN3-235ENST00000568497 CD48P09326 243 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 DLDP09622 509 aaKnown RBP14.19□□□□□ -0.14
CLN3-235ENST00000568497 MYBL1P10243 752 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 C6P13671 934 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 GOT1P17174 413 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 OR1E1P30953 314 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 AFF3P51826 1226 aaKnown RBP14.19□□□□□ -0.14
CLN3-235ENST00000568497 COPAP53621 1224 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 CDH4P55283 916 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 TARDBPQ13148 414 aaKnown RBP eCLIP14.19□□□□□ -0.14
CLN3-235ENST00000568497 MMRN1Q13201 1228 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 MESDQ14696 234 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 TEAD4Q15561 434 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 C5orf22Q49AR2 442 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 EFHC2Q5JST6 749 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 NLRP14Q86W24 1093 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 CCDC117Q8IWD4 279 aaPredicted RBP14.19□□□□□ -0.14
CLN3-235ENST00000568497 UCMAQ8WVF2 138 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 TTC17Q96AE7 1141 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 TBC1D31Q96DN5 1066 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 NAF1Q96HR8 494 aaKnown RBP14.19□□□□□ -0.14
CLN3-235ENST00000568497 DESI2Q9BSY9 194 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 ZYG11BQ9C0D3 744 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 OSBPL2Q9H1P3 480 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 TNKS2Q9H2K2 1166 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 TMEM245Q9H330 911 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 PRSS16Q9NQE7 514 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 REXO2Q9Y3B8 237 aaKnown RBP14.19□□□□□ -0.14
CLN3-235ENST00000568497 MGAQ8IWI9 3026 aa14.19□□□□□ -0.14
CLN3-235ENST00000568497 ATMQ13315 3056 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 SSU72P8A0A1W2PR75 194 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 CBX4O00257 560 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 BRINP1O60477 761 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 CLDN11O75508 207 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 EPHB2P29323 1055 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 ACTN2P35609 894 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 TPMTP51580 245 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 ECT2LQ008S8 904 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 LLGL1Q15334 1064 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 ARL13BQ3SXY8 428 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 ACCSLQ4AC99 568 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 ARHGAP40Q5TG30 622 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 HES3Q5TGS1 186 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 ARHGAP36Q6ZRI8 547 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 STK40Q8N2I9 435 aa14.18□□□□□ -0.14
CLN3-235ENST00000568497 C1orf216Q8TAB5 229 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms