RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 ACAT2Q9BWD1 397 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 CDADC1Q9BWV3 514 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 ADNPQ9H2P0 1102 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 VAT1LQ9HCJ6 419 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 TIGARQ9NQ88 270 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 FARSBQ9NSD9 589 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 IL37Q9NZH6 218 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 WHRNQ9P202 907 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 GABBR1Q9UBS5 961 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 DNAJC12Q9UKB3 198 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 NENFQ9UMX5 172 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 SMG5Q9UPR3 1016 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 SLC30A1Q9Y6M5 507 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 DOCK2Q92608 1830 aa3.79□□□□□ -1.8
MCF2-210ENST00000536274 DDX60LQ5H9U9 1706 aaKnown RBP3.79□□□□□ -1.8
MCF2-210ENST00000536274 CLUHO75153 1309 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 FRMPD4Q14CM0 1322 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 WDR19Q8NEZ3 1342 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 CNTNAP5Q8WYK1 1306 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 SYNGAP1Q96PV0 1343 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 DENND3A2RUS2 1198 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 GTPBP10A4D1E9 387 aaKnown RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 SYCE1LA8MT33 242 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 NEMP1O14524 444 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 ZBTB39O15060 712 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 POLR1CO15160 346 aaPredicted RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 TBX1O43435 398 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 TIPRLO75663 272 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 AKAP3O75969 853 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 CLPXO76031 633 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 MT-ND1P03886 318 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 FCER2P06734 321 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 RALAP11233 206 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 BMP4P12644 408 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 FOSL1P15407 271 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 CCNA2P20248 432 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 MMP8P22894 467 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 ELK4P28324 431 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 SLC26A3P40879 764 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 HAAOP46952 286 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 CENPAP49450 140 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 SNAP25P60880 206 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 ABCE1P61221 599 aaKnown RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 SLC18A2Q05940 514 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 GPS1Q13098 491 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 MADCAM1Q13477 382 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 CEACAM7Q14002 265 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 IKBKEQ14164 716 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 COG2Q14746 738 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 DGKDQ16760 1214 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 PITRM1Q5JRX3 1037 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 ATAD3CQ5T2N8 411 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 NXNL2Q5VZ03 156 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 KCTD20Q7Z5Y7 419 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 DCP2Q8IU60 420 aaKnown RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 IGDCC3Q8IVU1 814 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 GALNT12Q8IXK2 581 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 CACTIN-AS1Q8N1I8 211 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 GUF1Q8N442 669 aaKnown RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 TMEM102Q8N9M5 508 aaPredicted RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 PLBD2Q8NHP8 589 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 ACMSDQ8TDX5 336 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 JPH3Q8WXH2 748 aaPredicted RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 GLT1D1Q96MS3 346 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 PCDHB18PQ96TA0 734 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 UNKQ9C0B0 810 aaKnown RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 EHMT1Q9H9B1 1298 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 ZDHHC4Q9NPG8 344 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.78□□□□□ -1.8
MCF2-210ENST00000536274 EVA1BQ9NVM1 165 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 DPP3Q9NY33 737 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.78□□□□□ -1.8
MCF2-210ENST00000536274 STK17AQ9UEE5 414 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 PCDHA6Q9UN73 950 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 MRPS7Q9Y2R9 242 aaKnown RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 HCN4Q9Y3Q4 1203 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 PCDHA8Q9Y5H6 950 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 BPTFQ12830 3046 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 USP34Q70CQ2 3546 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 CENPFP49454 3210 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 A0A0B4J269 797 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 ARHGEF35A5YM69 484 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 SDR42E2A6NKP2 422 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 RGS13O14921 159 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 SYN3O14994 580 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 HTRA2O43464 458 aaPredicted RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 AVILO75366 819 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 FKBP9O95302 570 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 SLC4A1P02730 911 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 MT-ND3P03897 115 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 TMEM253P0C7T8 217 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 BMP3P12645 472 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 TCF4P15884 667 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 POU3F3P20264 500 aaPredicted RBP3.78□□□□□ -1.8
MCF2-210ENST00000536274 FSHRP23945 695 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 IL32P24001 234 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 SERPINB1P30740 379 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 ARRB2P32121 409 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 KRT20P35900 424 aa3.78□□□□□ -1.8
MCF2-210ENST00000536274 STAT1P42224 750 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms