RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ARL14Q8N4G2 192 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 TMIEQ8NEW7 156 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 GRIN3AQ8TCU5 1115 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 LMX1AQ8TE12 382 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 SPATA32Q96LK8 384 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 CCNL2Q96S94 520 aaPredicted RBP20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 TRIM62Q9BVG3 475 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 SLC4A5Q9BY07 1137 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 SLC17A9Q9BYT1 436 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 TNKS2Q9H2K2 1166 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 SYNDIG1Q9H7V2 258 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 IPO11Q9UI26 975 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 HS3ST3A1Q9Y663 406 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 FAM237AA0A1B0GTK4 181 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 TRIM49BA6NDI0 452 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 AQP9O43315 295 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 ENDOD1O94919 500 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 NME1P15531 152 aaKnown RBP20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 TPRG1LQ5T0D9 272 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 CLEC14AQ86T13 490 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 WDR36Q8NI36 951 aaKnown RBP20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 GRAMD1AQ96CP6 724 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 PSMB7Q99436 277 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 TSG101Q99816 390 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 GOLPH3LQ9H4A5 285 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 GPR27Q9NS67 375 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 DDIT4Q9NX09 232 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 HS3ST2Q9Y278 367 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 COL12A1Q99715 3063 aa20.79■□□□□ 0.92
SQSTM1-215ENST00000514093 SPTY2D1-AS1A0A0U1RR47 76 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 H3BM21 787 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 JUNDP17535 347 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 CCR1P32246 355 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 SRSF6Q13247 344 aaKnown RBP20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 PDE1CQ14123 709 aaPredicted RBP20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 NR0B2Q15466 257 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 LINGO4Q6UY18 593 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 KYAT3Q6YP21 454 aaKnown RBP20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 PARGQ86W56 976 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 DEFB106AQ8N104 65 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 LMO3Q8TAP4 145 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 THAP9Q9H5L6 903 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 SALL4Q9UJQ4 1053 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 HS3ST4Q9Y661 456 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 CSNK1G3Q9Y6M4 447 aa20.78■□□□□ 0.92
SQSTM1-215ENST00000514093 BOD1L1Q8NFC6 3051 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 SPINT1O43278 529 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 CNTN5O94779 1100 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 PRNPP04156 253 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 SLC2A3P11169 496 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 PDX1P52945 283 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 CDK17Q00537 523 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 C1orf61Q13536 156 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 TGIF1Q15583 401 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 COLEC12Q5KU26 742 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 TMEM110Q86TL2 294 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 LURAP1LQ8IV03 231 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 TPCN2Q8NHX9 752 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 FAM174AQ8TBP5 190 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 EXTL1Q92935 676 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 CCDC114Q96M63 670 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 MED15Q96RN5 788 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 IL12RB2Q99665 862 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 HDAC8Q9BY41 377 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 SIK2Q9H0K1 926 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 TCEAL2Q9H3H9 227 aaPredicted RBP20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 METTL14Q9HCE5 456 aaKnown RBP20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 NCKIPSDQ9NZQ3 722 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 IL36AQ9UHA7 158 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 VPS51Q9UID3 782 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 TBC1D30Q9Y2I9 924 aa20.77■□□□□ 0.92
SQSTM1-215ENST00000514093 RP1P56715 2156 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 TERTO14746 1132 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 CLDN11O75508 207 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 LEFTY1O75610 366 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 TCEA3O75764 348 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 GRAP2O75791 330 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 ZNF202O95125 648 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 HSP90AA1P07900 732 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 RHOCP08134 193 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 KRT5P13647 590 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 RPS21P63220 83 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 KRT83P78385 493 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 NME3Q13232 169 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 PNOCQ13519 176 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 ALFQ53S48 1182 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 DPY19L3Q6ZPD9 716 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 RBFAQ8N0V3 343 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 KREMEN1Q96MU8 473 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 CCDC3Q9BQI4 270 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 ARHGAP9Q9BRR9 750 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 ACP6Q9NPH0 428 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 TRPM6Q9BX84 2022 aa20.76■□□□□ 0.91
SQSTM1-215ENST00000514093 CCDC187A0A096LP49 1063 aa20.75■□□□□ 0.91
SQSTM1-215ENST00000514093 PAGE1O75459 146 aa20.75■□□□□ 0.91
SQSTM1-215ENST00000514093 GCATO75600 419 aa20.75■□□□□ 0.91
SQSTM1-215ENST00000514093 LETM1O95202 739 aaPredicted RBP20.75■□□□□ 0.91
SQSTM1-215ENST00000514093 RABIFP47224 123 aa20.75■□□□□ 0.91
SQSTM1-215ENST00000514093 ADKP55263 362 aaKnown RBP20.75■□□□□ 0.91
SQSTM1-215ENST00000514093 CDH4P55283 916 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms