RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 NPAP1Q9NZP6 1156 aa5.83□□□□□ -1.48
SCN1A-216ENST00000637968 ASTN2O75129 1339 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 A8MV72 311 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SNAP23O00161 211 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 KCNN4O15554 427 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 TBC1D4O60343 1298 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PSIP1O75475 530 aaKnown RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SCO1O75880 301 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 COL6A1P12109 1028 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 C4BPBP20851 252 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 FGFR2P21802 821 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 OSBPP22059 807 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 FMO4P31512 558 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 GUCY1A2P33402 732 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PTGIRP43119 386 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PPP5CP53041 499 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 RAB25P57735 213 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 KCNC4Q03721 635 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 CLCQ05315 142 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 RIPPLY1Q0D2K3 151 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PPP1R3AQ16821 1122 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 INAVAQ3KP66 663 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 LRRC24Q50LG9 513 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 EPC2Q52LR7 807 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 WDR44Q5JSH3 913 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 CCNYL2Q5T2Q4 361 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 VWA5B1Q5TIE3 1220 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 KRT79Q5XKE5 535 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ERICH5Q6P6B1 374 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 KSR2Q6VAB6 950 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 LRRTM3Q86VH5 581 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 DGKHQ86XP1 1220 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PDIK1LQ8N165 341 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SH3RF3Q8TEJ3 882 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 KLHL6Q8WZ60 621 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ST8SIA2Q92186 375 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 RORBQ92753 470 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PAWRQ96IZ0 340 aaKnown RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SP110Q9HB58 689 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ERVK-5Q9HDB9 667 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 CUEDC1Q9NWM3 386 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 GLS2Q9UI32 602 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ENPP5Q9UJA9 477 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 RAB23Q9ULC3 237 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 POLIQ9UNA4 740 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 GRIP1Q9Y3R0 1128 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 NCAPD2Q15021 1401 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ST8SIA5O15466 376 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 GPAA1O43292 621 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 NBNO60934 754 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 HSPA4LO95757 839 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 NDST3O95803 873 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 P4HBP07237 508 aaKnown RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 RETP07949 1114 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SRCP12931 536 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 COX4I1P13073 169 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PRG2P13727 222 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 POU2F1P14859 743 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ARHGDIBP52566 201 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 CACNB3P54284 484 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PPATQ06203 517 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PMS2P3Q13401 168 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 GK3PQ14409 553 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ZMYND11Q15326 602 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ASTE1Q2TB18 679 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 USP41Q3LFD5 358 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 FBXO43Q4G163 708 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 TOR2AQ5JU69 321 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF517Q6ZMY9 492 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 CFAP77Q6ZQR2 320 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 LYSMD3Q7Z3D4 306 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SNX20Q7Z614 316 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SLFN11Q7Z7L1 901 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 TDRPQ86YL5 185 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 COLGALT2Q8IYK4 626 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 LRRC47Q8N1G4 583 aaKnown RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 OR8K5Q8NH50 307 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 FAR1Q8WVX9 515 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SLC44A1Q8WWI5 657 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 USP13Q92995 863 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ART5Q96L15 291 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 ZNF578Q96N58 590 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 COPS4Q9BT78 406 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 NPLQ9BXD5 320 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 C1QTNF7Q9BXJ2 289 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SLC13A1Q9BZW2 595 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 UCK2Q9BZX2 261 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 MKNK2Q9HBH9 465 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 EML1O00423 815 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 CLDN3O15551 220 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 SGCEO43556 437 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 OR2B3O76000 313 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 MTHFD1P11586 935 aaKnown RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 TNNI3P19429 210 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 TGM2P21980 687 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 PSMA4P25789 261 aaKnown RBP5.82□□□□□ -1.48
SCN1A-216ENST00000637968 AXLP30530 894 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 CHRNA5P30532 468 aa5.82□□□□□ -1.48
SCN1A-216ENST00000637968 GPC5P78333 572 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms