RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TMC6Q7Z403 805 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 ARHGEF19Q8IW93 802 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 KLK6Q92876 244 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 ERCC4Q92889 916 aaPredicted RBP18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 SLC4A5Q9BY07 1137 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 SEMA4CQ9C0C4 833 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 METTL14Q9HCE5 456 aaKnown RBP18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 U3KQA8 63 aa18.32■□□□□ 0.52
CLSTN3-214ENST00000542663 CYSRT1A8MQ03 144 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 ALOX15BO15296 676 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 RNGTTO60942 597 aaKnown RBP18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 CTSLP07711 333 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 MYF5P13349 255 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 TMPRSS3P57727 454 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 GABREP78334 506 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 DLG2Q15700 870 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 ACCSLQ4AC99 568 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 TTC39BQ5VTQ0 682 aaPredicted RBP18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 DENND1BQ6P3S1 775 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 ATP6V0D2Q8N8Y2 350 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 WBP1Q96G27 269 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 KREMEN1Q96MU8 473 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 FEM1AQ9BSK4 669 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 POPDC2Q9HBU9 364 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 PREBQ9HCU5 417 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 FZD3Q9NPG1 666 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 KLHL11Q9NVR0 708 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 SLC25A13Q9UJS0 675 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 OR51B4Q9Y5P0 310 aa18.31■□□□□ 0.52
CLSTN3-214ENST00000542663 E5RJQ4 531 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 C1QTNF3-AMACRE9PGA6 284 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 RNF103O00237 685 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 SLC31A1O15431 190 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 USP12O75317 370 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 PIAS2O75928 621 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 ACADSBP45954 432 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 YWHAZP63104 245 aaKnown RBP18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 RHDQ02161 417 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 GCNT1Q02742 428 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 LRRC63Q05C16 580 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 TAF5Q15542 800 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 ZNF284Q2VY69 593 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 TAF1BQ53T94 588 aaPredicted RBP18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 ARHGAP40Q5TG30 622 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 FBXL22Q6P050 247 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 SLC22A18ASQ8N1D0 253 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 SH2D3CQ8N5H7 860 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 OR13H1Q8NG92 308 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 STK32AQ8WU08 396 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 APOLD1Q96LR9 279 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 NOX5Q96PH1 765 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 TRIM62Q9BVG3 475 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 ASCL3Q9NQ33 180 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 RMND1Q9NWS8 449 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 CNTN6Q9UQ52 1028 aa18.3■□□□□ 0.52
CLSTN3-214ENST00000542663 A0A1W2PQU0 124 aa18.29■□□□□ 0.52
CLSTN3-214ENST00000542663 CAPN8A6NHC0 703 aa18.29■□□□□ 0.52
CLSTN3-214ENST00000542663 CSO75390 466 aaKnown RBP18.29■□□□□ 0.52
CLSTN3-214ENST00000542663 LSSP48449 732 aa18.29■□□□□ 0.52
CLSTN3-214ENST00000542663 RABGAP1LQ5R372 815 aa18.29■□□□□ 0.52
CLSTN3-214ENST00000542663 TMEM110Q86TL2 294 aa18.29■□□□□ 0.52
CLSTN3-214ENST00000542663 DEPDC7Q96QD5 511 aa18.29■□□□□ 0.52
CLSTN3-214ENST00000542663 CALN1Q9BXU9 219 aa18.29■□□□□ 0.52
CLSTN3-214ENST00000542663 THAP9Q9H5L6 903 aa18.29■□□□□ 0.52
CLSTN3-214ENST00000542663 SSUH2Q9Y2M2 353 aa18.29■□□□□ 0.52
CLSTN3-214ENST00000542663 CHD5Q8TDI0 1954 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 A0A1W2PNU3 283 aaPredicted RBP18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 BNIP3LO60238 219 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 LZTS3O60299 673 aaPredicted RBP18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 GP1BAP07359 652 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 SRCP12931 536 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 ZNF18P17022 549 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 UCNP55089 124 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 OXCT1P55809 520 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 CLDN2P57739 230 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 ERVPABLB-1P60509 514 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 AUHQ13825 339 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 LY6DQ14210 128 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 HS1BP3Q53T59 392 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 BROXQ5VW32 411 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 GCNT7Q6ZNI0 430 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 LSMEM2Q8N112 164 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 SNRNP27Q8WVK2 155 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 KCNE4Q8WWG9 221 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 TTC9Q92623 222 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 ARRDC3Q96B67 414 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 RPRD1AQ96P16 312 aaPredicted RBP18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 GSDMAQ96QA5 445 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 POLR1BQ9H9Y6 1135 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 NLGN3Q9NZ94 848 aa18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 ZFR2Q9UPR6 939 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-214ENST00000542663 MAST4O15021 2626 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 MT-CO1P00395 513 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 HNRNPA2B1P22626 353 aaKnown RBP18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 GGCXP38435 758 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 MEA1Q16626 185 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 NEK5Q6P3R8 708 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 ABI3BPQ7Z7G0 1075 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 HORMAD1Q86X24 394 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms