RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 SLC18A1P54219 525 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 OCA2Q04671 838 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 NR1D2Q14995 579 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 SCYL2Q6P3W7 929 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 PAOXQ6QHF9 649 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 SIX5Q8N196 739 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 SIX6OS1Q8N1H7 587 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.12□□□□□ -0.63
LSM3-201ENST00000306024 DPF3Q92784 378 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 ACSF2Q96CM8 615 aaPredicted RBP11.12□□□□□ -0.63
LSM3-201ENST00000306024 ADA2Q9NZK5 511 aa11.12□□□□□ -0.63
LSM3-201ENST00000306024 FOXD2O60548 495 aaPredicted RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 SNRPAP09012 282 aaKnown RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 ODC1P11926 461 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 VARSP26640 1264 aaKnown RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 PCSK6P29122 969 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 LRRC52Q8N7C0 313 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 SPATA17Q96L03 361 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 PPP1R36Q96LQ0 422 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 MRPL46Q9H2W6 279 aaKnown RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 XPO7Q9UIA9 1087 aaKnown RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 HEMK1Q9Y5R4 338 aaPredicted RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 SYNJ2BP-COX16A0A087WUM0 186 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 MEIS3P2A8K0S8 358 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 ALDH2P05091 517 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 DLDP09622 509 aaKnown RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 FGFR1P11362 822 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 VDRP11473 427 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 MSX2P35548 267 aaPredicted RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 RXRGP48443 463 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 TPD52P55327 224 aaPredicted RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 GOLGA7BQ2TAP0 167 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 WSCD1Q658N2 575 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 TTC33Q6PID6 262 aaPredicted RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 SLC39A5Q6ZMH5 540 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 LMO3Q8TAP4 145 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 PCDHB18PQ96TA0 734 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 EFHD1Q9BUP0 239 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 EPB41L1Q9H4G0 881 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 COX16Q9P0S2 106 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 CDH22Q9UJ99 828 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 PSMD13Q9UNM6 376 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 POMPQ9Y244 141 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 AP4S1Q9Y587 144 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 CFAP99D6REC4 459 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 E9PBE3 544 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 SERPINA6P08185 405 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 IDO1P14902 403 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 CPB1P15086 417 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 SLC5A2P31639 672 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 BMPR2Q13873 1038 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 STILQ15468 1287 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 ACAD10Q6JQN1 1059 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 AHI1Q8N157 1196 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 BBS5Q8N3I7 341 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 COLEC11Q9BWP8 271 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 C6orf203Q9P0P8 240 aaPredicted RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 WARS2Q9UGM6 360 aaKnown RBP11.11□□□□□ -0.63
LSM3-201ENST00000306024 SHOC2Q9UQ13 582 aa11.11□□□□□ -0.63
LSM3-201ENST00000306024 PPEF2O14830 753 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 ALOX15BO15296 676 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 CLTBP09497 229 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 HSPA8P11142 646 aaKnown RBP11.1□□□□□ -0.63
LSM3-201ENST00000306024 TUSC3Q13454 348 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 UGT2A3Q6UWM9 527 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 TMEM130Q8N3G9 435 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 TMEM199Q8N511 208 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 RNF34Q969K3 372 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 YME1L1Q96TA2 773 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 SIX4Q9UIU6 781 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 RABGEF1Q9UJ41 708 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 STRIP2Q9ULQ0 834 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 DCXO43602 365 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 GSTM4Q03013 218 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 PEX6Q13608 980 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 FAM102AQ5T9C2 384 aaPredicted RBP11.1□□□□□ -0.63
LSM3-201ENST00000306024 PDPK2PQ6A1A2 396 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 KYAT3Q6YP21 454 aaKnown RBP11.1□□□□□ -0.63
LSM3-201ENST00000306024 PPIL6Q8IXY8 311 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 SMG8Q8ND04 991 aaKnown RBP11.1□□□□□ -0.63
LSM3-201ENST00000306024 USP13Q92995 863 aaPredicted RBP11.1□□□□□ -0.63
LSM3-201ENST00000306024 NRDE2Q9H7Z3 1164 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 ZNF229Q9UJW7 825 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 RAB26Q9ULW5 256 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 HSPA4LO95757 839 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 LCP1P13796 627 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 STIP1P31948 543 aaKnown RBP11.1□□□□□ -0.63
LSM3-201ENST00000306024 BRCC3P46736 316 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 BCAP31P51572 246 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 CDO1Q16878 200 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 CYP4A22Q5TCH4 519 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 MROH9Q5TGP6 573 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 TTC39BQ5VTQ0 682 aaPredicted RBP11.1□□□□□ -0.63
LSM3-201ENST00000306024 IRGQQ8WZA9 623 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 SLCO2A1Q92959 643 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 TMA16Q96EY4 203 aaKnown RBP11.1□□□□□ -0.63
LSM3-201ENST00000306024 ZNF395Q9H8N7 513 aaPredicted RBP11.1□□□□□ -0.63
LSM3-201ENST00000306024 SCHIP1Q9P0W5 487 aaPredicted RBP11.1□□□□□ -0.63
LSM3-201ENST00000306024 KIAA1257Q9ULG3 409 aa11.1□□□□□ -0.63
LSM3-201ENST00000306024 SSX2IPQ9Y2D8 614 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms