RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 GYS1P13807 737 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CYP2A7P20853 494 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CDH3P22223 829 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RRM2P31350 389 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TRIM23P36406 574 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 QARSP47897 775 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 EPHA4P54764 986 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CDK17Q00537 523 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CYP27A1Q02318 531 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ADCY1Q08828 1119 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC74AQ0VAA2 488 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NR1D2Q14995 579 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 WDR45BQ5MNZ6 344 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ANO7Q6IWH7 933 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RHOT1Q8IXI2 618 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CLEC4FQ8N1N0 589 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 OR6J1Q8NGC5 347 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 UBE2E3Q969T4 207 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MAGED4Q96JG8 741 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 C12orf66Q96MD2 445 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ABCB6Q9NP58 842 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 B3GAT2Q9NPZ5 323 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 FEM1BQ9UK73 627 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KDRP35968 1356 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SLX4Q8IY92 1834 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PRRC2CQ9Y520 2896 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM88BA6NKF7 163 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MSH3P20585 1137 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NOS3P29474 1203 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 GPC1P35052 558 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CRISP1P54107 249 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SLC26A5P58743 744 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NAA20P61599 178 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 DGKZQ13574 1117 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NFE2Q16621 373 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KLHL38Q2WGJ6 581 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ALG10BQ5I7T1 473 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PLA2G4FQ68DD2 849 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CDC73Q6P1J9 531 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 FIGLAQ6QHK4 219 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SPAG16Q8N0X2 631 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CYP4Z2PQ8N1L4 340 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ATP6V1C2Q8NEY4 427 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ANKK1Q8NFD2 765 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PTERQ96BW5 349 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 IL12RB2Q99665 862 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 HDHD5Q9BXW7 423 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PCBD2Q9H0N5 130 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MIR1-1HGQ9H1L0 117 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MROH8Q9H579 483 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CHD8Q9HCK8 2581 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MLXIPLQ9NP71 852 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CASS4Q9NQ75 786 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 COMMD3Q9UBI1 195 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 POLKQ9UBT6 870 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 LRWD1Q9UFC0 647 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHA2Q9Y5H9 948 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 IRAK3Q9Y616 596 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MGAT4DA6NG13 374 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 K7ENM7 598 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ADCY6O43306 1168 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF208O43345 1280 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 AKAP8O43823 692 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF862O60290 1169 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PFKFB2O60825 505 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 VIL1P09327 827 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CDK4P11802 303 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RPS2P15880 293 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PGAM1P18669 254 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 POLR2EP19388 210 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MASP1P48740 699 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 GYS2P54840 703 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 EIF3EP60228 445 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MAD2L1Q13257 205 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 GRHL2Q6ISB3 625 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RBBP8NLQ8NC74 664 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 PLBD2Q8NHP8 589 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 KLHL6Q8WZ60 621 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TCEAL3Q969E4 200 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MOAP1Q96BY2 351 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 LENG1Q96BZ8 264 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CCDC115Q96NT0 180 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TAAR9Q96RI9 348 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TBC1D10AQ9BXI6 508 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CD248Q9HCU0 757 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SLC40A1Q9NP59 571 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 NANSQ9NR45 359 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CLIC5Q9NZA1 410 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 RABL2BQ9UNT1 228 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 JCADQ9P266 1359 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SH3D21A4FU49 640 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF879B4DU55 563 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 MED26O95402 600 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TOP3BO95985 862 aaKnown RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 BMP3P12645 472 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SCNN1AP37088 669 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 CUL2Q13617 745 aa2.83□□□□□ -1.96
SCN1A-219ENST00000641575 TRIP13Q15645 432 aaPredicted RBP2.83□□□□□ -1.96
SCN1A-219ENST00000641575 SGCBQ16585 318 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms