RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 EMBQ6PCB8 327 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 CCDC137Q6PK04 289 aaKnown RBP10.5□□□□□ -0.73
SS18-210ENST00000578700 C19orf48Q6RUI8 117 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 TMEM92Q6UXU6 159 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 CLEC20AQ6ZU45 233 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 SYDE1Q6ZW31 735 aaPredicted RBP10.5□□□□□ -0.73
SS18-210ENST00000578700 RASSF3Q86WH2 238 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 CPNE8Q86YQ8 564 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 SFTPA1Q8IWL2 248 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 HDDC3Q8N4P3 179 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 CHCHD4Q8N4Q1 142 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 EIF1ADQ8N9N8 165 aaKnown RBP10.5□□□□□ -0.73
SS18-210ENST00000578700 TTC13Q8NBP0 860 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 TXNDC5Q8NBS9 432 aaKnown RBP10.5□□□□□ -0.73
SS18-210ENST00000578700 HMGB4Q8WW32 186 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 IFT81Q8WYA0 676 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 MYLPFQ96A32 169 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 FAM149B1Q96BN6 582 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 PCED1BQ96HM7 432 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 SPACA7Q96KW9 195 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 TBCBQ99426 244 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 B3GNT5Q9BYG0 378 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 DMAP1Q9NPF5 467 aaPredicted RBP10.5□□□□□ -0.73
SS18-210ENST00000578700 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.5□□□□□ -0.73
SS18-210ENST00000578700 AMACRQ9UHK6 382 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 MMP17Q9ULZ9 603 aa10.5□□□□□ -0.73
SS18-210ENST00000578700 SOBPA7XYQ1 873 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 LEFTY2O00292 366 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 TULP2O00295 520 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 CLDN5O00501 218 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 DAB1O75553 588 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 TRUB2O95900 331 aaKnown RBP10.49□□□□□ -0.73
SS18-210ENST00000578700 HNRNPLP14866 589 aaKnown RBP eCLIP10.49□□□□□ -0.731e-9■■■■■ 30.1
SS18-210ENST00000578700 MIPP30301 263 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 FLT3P36888 993 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 COILP38432 576 aaPredicted RBP10.49□□□□□ -0.73
SS18-210ENST00000578700 USP4Q13107 963 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 PDK2Q15119 407 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 PPP1R7Q15435 360 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 CYP1B1Q16678 543 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 CDO1Q16878 200 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 AADACL2Q6P093 401 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 SPOCD1Q6ZMY3 1216 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 SYT12Q8IV01 421 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 ALLCQ8N6M5 410 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 PRELID2Q8N945 189 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.49□□□□□ -0.73
SS18-210ENST00000578700 FAM172AQ8WUF8 416 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 IRGQQ8WZA9 623 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 HSPH1Q92598 858 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 ERLEC1Q96DZ1 483 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 SLITRK1Q96PX8 696 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 HEMGNQ9BXL5 484 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 FRMD8P1Q9BZ68 369 aaPredicted RBP10.49□□□□□ -0.73
SS18-210ENST00000578700 LRRC19Q9H756 370 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 PNPLA8Q9NP80 782 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 POLMQ9NP87 494 aaPredicted RBP10.49□□□□□ -0.73
SS18-210ENST00000578700 CNGB3Q9NQW8 809 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 GDF3Q9NR23 364 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 RRN3Q9NYV6 651 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 PCSK1NQ9UHG2 260 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 PCYOX1Q9UHG3 505 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 DMGDHQ9UI17 866 aaKnown RBP10.49□□□□□ -0.73
SS18-210ENST00000578700 MBD1Q9UIS9 605 aaPredicted RBP10.49□□□□□ -0.73
SS18-210ENST00000578700 EFR3BQ9Y2G0 817 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 MSRB2Q9Y3D2 182 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 NEUROG3Q9Y4Z2 214 aa10.49□□□□□ -0.73
SS18-210ENST00000578700 BPTFQ12830 3046 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 SGK1O00141 431 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 NDC80O14777 642 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 TTI1O43156 1089 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 ZBED1O96006 694 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 APODP05090 189 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 RARAP10276 462 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 ITPKAP23677 461 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 NOS2P35228 1153 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 GRIK1P39086 918 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 P2RY2P41231 377 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 MATKP42679 507 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 SULT1E1P49888 294 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 MRPS21P82921 87 aaKnown RBP10.48□□□□□ -0.73
SS18-210ENST00000578700 ATP11AP98196 1134 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 SLC25A11Q02978 314 aaKnown RBP10.48□□□□□ -0.73
SS18-210ENST00000578700 TFDP2Q14188 446 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 CCNG2Q16589 344 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 CCDC14Q49A88 953 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 LYSMD4Q5XG99 296 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 KAZNQ674X7 775 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 FAM171BQ6P995 826 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 SND1Q7KZF4 910 aaKnown RBP eCLIP10.48□□□□□ -0.73
SS18-210ENST00000578700 STRADAQ7RTN6 431 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 GSTA5Q7RTV2 222 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 JAMLQ86YT9 394 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 ATL2Q8NHH9 583 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 CCHCR1Q8TD31 782 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 TEKT4Q8WW24 435 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 TRMT2BQ96GJ1 504 aaKnown RBP10.48□□□□□ -0.73
SS18-210ENST00000578700 CCDC114Q96M63 670 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 CFAP57Q96MR6 1250 aa10.48□□□□□ -0.73
SS18-210ENST00000578700 ERP44Q9BS26 406 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms