RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 SGPL1O95470 568 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 PHKG2P15735 406 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 ATF7P17544 494 aaPredicted RBP12.66□□□□□ -0.38
USP3-203ENST00000538686 KCNA4P22459 653 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 RBL1P28749 1068 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 HSPA1LP34931 641 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SLC9A3P48764 834 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 CTSWP56202 376 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 MAP3K7CLP57077 242 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SRP54P61011 504 aaKnown RBP12.66□□□□□ -0.38
USP3-203ENST00000538686 TNFAIP2Q03169 654 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 TARDBPQ13148 414 aaKnown RBP eCLIP12.66□□□□□ -0.38
USP3-203ENST00000538686 CBLBQ13191 982 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 ZNF181Q2M3W8 571 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 BBS9Q3SYG4 887 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SBK1Q52WX2 424 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 FASTKD1Q53R41 847 aaKnown RBP12.66□□□□□ -0.38
USP3-203ENST00000538686 CCNYL2Q5T2Q4 361 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 BROXQ5VW32 411 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 POTEBQ6S5H4 581 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 STXBP4Q6ZWJ1 553 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SNX32Q86XE0 403 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SLC2A14Q8TDB8 520 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 STON2Q8WXE9 905 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 ATP6V1E2Q96A05 226 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 HDAC11Q96DB2 347 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 MAP6Q96JE9 813 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 FAM118BQ9BPY3 351 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SEMA6AQ9H2E6 1030 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 WDR41Q9HAD4 459 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 EFCAB1Q9HAE3 211 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 WDR6Q9NNW5 1121 aaKnown RBP12.66□□□□□ -0.38
USP3-203ENST00000538686 SMOXQ9NWM0 555 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 PCSK1NQ9UHG2 260 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 PCDHGC3Q9UN70 934 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SNX13Q9Y5W8 968 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 GAKO14976 1311 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.66□□□□□ -0.38
USP3-203ENST00000538686 GOLGA8SH3BPF8 625 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SGK1O00141 431 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 TRDMT1O14717 391 aaKnown RBP12.66□□□□□ -0.38
USP3-203ENST00000538686 TGFB1I1O43294 461 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 BANF1O75531 89 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 ZMPSTE24O75844 475 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SLITRK3O94933 977 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 PIK3R1P27986 724 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 GRK3P35626 688 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 OR3A3P47888 321 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 PPP5CP53041 499 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 ART3Q13508 389 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 COG2Q14746 738 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 DGUOKQ16854 277 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 ZNF544Q6NX49 715 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SYCE2Q6PIF2 218 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 CDR2LQ86X02 465 aaPredicted RBP12.66□□□□□ -0.38
USP3-203ENST00000538686 CATSPER3Q86XQ3 398 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 SFRP1Q8N474 314 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 CMASQ8NFW8 434 aaPredicted RBP12.66□□□□□ -0.38
USP3-203ENST00000538686 CPT1BQ92523 772 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 GJA10Q969M2 543 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 OMA1Q96E52 524 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 DCAF5Q96JK2 942 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 LENG8Q96PV6 779 aaPredicted RBP12.66□□□□□ -0.38
USP3-203ENST00000538686 GREM2Q9H772 168 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 RAB20Q9NX57 234 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 MOCS1Q9NZB8 636 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 NOSIPQ9Y314 301 aaKnown RBP12.66□□□□□ -0.38
USP3-203ENST00000538686 PCDHAC2Q9Y5I4 1007 aa12.66□□□□□ -0.38
USP3-203ENST00000538686 CYB561D2O14569 222 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 RFPL1O75677 317 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 MFN2O95140 757 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 HADHAP40939 763 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 GRM5P41594 1212 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 ECE1P42892 770 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 SERPINB9P50453 376 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 ADCY7P51828 1080 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 MLLT6P55198 1093 aaPredicted RBP12.65□□□□□ -0.38
USP3-203ENST00000538686 MPP1Q00013 466 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 PEX6Q13608 980 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 TRIM25Q14258 630 aaKnown RBP12.65□□□□□ -0.38
USP3-203ENST00000538686 SLC35G1Q2M3R5 365 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 MSS51Q4VC12 460 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 ESCO1Q5FWF5 840 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 GTF2IRD2BQ6EKJ0 949 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.65□□□□□ -0.38
USP3-203ENST00000538686 CHSY3Q70JA7 882 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 MAVSQ7Z434 540 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 GTF2IRD2Q86UP8 949 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 ZBTB46Q86UZ6 589 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 HORMAD1Q86X24 394 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 KCTD17Q8N5Z5 321 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 MARCH10Q8NA82 808 aaPredicted RBP12.65□□□□□ -0.38
USP3-203ENST00000538686 REEP2Q9BRK0 252 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 C9orf16Q9BUW7 83 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 ACAT2Q9BWD1 397 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 TCF7L2Q9NQB0 619 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 UBR2Q8IWV8 1755 aa12.65□□□□□ -0.38
USP3-203ENST00000538686 TCRBV3S1A0A5B6 114 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 UBAP1LF5GYI3 381 aa12.65□□□□□ -0.39
USP3-203ENST00000538686 SMIM22K7EJ46 135 aa12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms