RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 NOL6Q9H6R4 1146 aaKnown RBP13.88□□□□□ -0.19
LINC00540-202ENST00000616974 USP18Q9UMW8 372 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 AP4E1Q9UPM8 1137 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 ANKRD36A6QL64 1941 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 BPTFQ12830 3046 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 K7ERQ8 282 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 TMEM253P0C7T8 217 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 GOT1P17174 413 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 SCAPQ12770 1279 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 LPAL2Q16609 132 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 FBXO43Q4G163 708 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 PPP6R3Q5H9R7 873 aaPredicted RBP13.87□□□□□ -0.19
LINC00540-202ENST00000616974 LINGO4Q6UY18 593 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 SYT13Q7L8C5 426 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 SYNPOQ8N3V7 929 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.87□□□□□ -0.19
LINC00540-202ENST00000616974 FNIP1Q8TF40 1166 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 RLN3Q8WXF3 142 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 CTNNBL1Q8WYA6 563 aaPredicted RBP13.87□□□□□ -0.19
LINC00540-202ENST00000616974 NTAN1Q96AB6 310 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 C1orf74Q96LT6 269 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 PSMB7Q99436 277 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 MKRN2Q9H000 416 aaKnown RBP13.87□□□□□ -0.19
LINC00540-202ENST00000616974 ETNK2Q9NVF9 386 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 THAP10Q9P2Z0 257 aaPredicted RBP13.87□□□□□ -0.19
LINC00540-202ENST00000616974 STON1Q9Y6Q2 735 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 TTC34A8MYJ7 566 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 NDUFA10O95299 355 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 LCA5LO95447 670 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 NHLH1Q02575 133 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 MESDQ14696 234 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 RABGAP1LQ5R372 815 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 RNF219Q5W0B1 726 aaPredicted RBP13.87□□□□□ -0.19
LINC00540-202ENST00000616974 HSPH1Q92598 858 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 TRIM11Q96F44 468 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 FEM1AQ9BSK4 669 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 MRPL47Q9HD33 250 aaKnown RBP13.87□□□□□ -0.19
LINC00540-202ENST00000616974 HCN4Q9Y3Q4 1203 aa13.87□□□□□ -0.19
LINC00540-202ENST00000616974 ASPMQ8IZT6 3477 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 CACNA1EQ15878 2313 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 TCRBV21S2A2A0A5A6 115 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 SMAD6O43541 496 aaKnown RBP13.86□□□□□ -0.19
LINC00540-202ENST00000616974 RARAP10276 462 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 HOXB2P14652 356 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 OR1E1P30953 314 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 CCR3P51677 355 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 MMRN1Q13201 1228 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 LRRN4Q8WUT4 740 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 HMGB4Q8WW32 186 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 BAG1Q99933 345 aaPredicted RBP13.86□□□□□ -0.19
LINC00540-202ENST00000616974 DDX50Q9BQ39 737 aaKnown RBP13.86□□□□□ -0.19
LINC00540-202ENST00000616974 SLC2A11Q9BYW1 496 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 OSBPL2Q9H1P3 480 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 TBC1D30Q9Y2I9 924 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 PCDHA13Q9Y5I0 950 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 EPN1Q9Y6I3 576 aaPredicted RBP13.86□□□□□ -0.19
LINC00540-202ENST00000616974 CABIN1Q9Y6J0 2220 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 PLXND1Q9Y4D7 1925 aa13.86□□□□□ -0.19
LINC00540-202ENST00000616974 EPHB2P29323 1055 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 NTSR1P30989 418 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 L1CAMP32004 1257 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 MAGEA1P43355 309 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 METAP1P53582 386 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 CDH4P55283 916 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 MRPS21P82921 87 aaKnown RBP13.85□□□□□ -0.19
LINC00540-202ENST00000616974 LLGL1Q15334 1064 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 AHI1Q8N157 1196 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 NPWQ8N729 165 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 CELF6Q96J87 481 aaKnown RBP13.85□□□□□ -0.19
LINC00540-202ENST00000616974 ZYG11BQ9C0D3 744 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 TMEM245Q9H330 911 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.85□□□□□ -0.19
LINC00540-202ENST00000616974 CWC15Q9P013 229 aaKnown RBP13.85□□□□□ -0.19
LINC00540-202ENST00000616974 TYW5A2RUC4 315 aaKnown RBP13.85□□□□□ -0.19
LINC00540-202ENST00000616974 HRO43593 1189 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 BUB1O43683 1085 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 CD160O95971 181 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 EPHX1P07099 455 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 GABRG2P18507 467 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 NDUFV2P19404 249 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 ENPP2Q13822 863 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 ARL13BQ3SXY8 428 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 EFHC2Q5JST6 749 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 ERMARDQ5T6L9 678 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 PPP1R2P3Q6NXS1 205 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 NELL1Q92832 810 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 ATOH1Q92858 354 aaPredicted RBP13.85□□□□□ -0.19
LINC00540-202ENST00000616974 TTC17Q96AE7 1141 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 GABRG3Q99928 467 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 ANP32EQ9BTT0 268 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 VPS28Q9UK41 221 aa13.85□□□□□ -0.19
LINC00540-202ENST00000616974 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.84□□□□□ -0.19
LINC00540-202ENST00000616974 GOLGA6L3A6NEY3 463 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 MYO1FO00160 1098 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 PRPSAP2O60256 369 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 CLDN11O75508 207 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 RNF8O76064 485 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 MAP3K6O95382 1288 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 RHOCP08134 193 aa13.84□□□□□ -0.19
LINC00540-202ENST00000616974 DLDP09622 509 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms