RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MOCOSQ96EN8 888 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 MFSD3Q96ES6 412 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 SIKE1Q9BRV8 207 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 ULBP1Q9BZM6 244 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 MAN1C1Q9NR34 630 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 VANGL2Q9ULK5 521 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 PPM1HQ9ULR3 514 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 SORCS3Q9UPU3 1222 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 IPPQ9Y573 584 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 SNX10Q9Y5X0 201 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 NRCAMQ92823 1304 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 SMIM35A0A1B0GVV1 85 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 YJEFN3A6XGL0 299 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 ZNF195O14628 629 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 TREHO43280 583 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 KCNE1P15382 129 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 TPH1P17752 444 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 MX2P20592 715 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 WARSP23381 471 aaKnown RBP18.37■□□□□ 0.53
VIM-206ENST00000487938 GRK2P25098 689 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 AP2B1P63010 937 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 CDC42EP1Q00587 391 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 PDPK2PQ6A1A2 396 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 NAPRTQ6XQN6 538 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 EFCAB3Q8N7B9 438 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 NPLOC4Q8TAT6 608 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 AGR3Q8TD06 166 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 UPF1Q92900 1129 aaKnown RBP eCLIP18.37■□□□□ 0.53
VIM-206ENST00000487938 ZFP42Q96MM3 310 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 KCNK16Q96T55 309 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 ZNF184Q99676 751 aaPredicted RBP18.37■□□□□ 0.53
VIM-206ENST00000487938 RBBP8Q99708 897 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 ABHD16BQ9H3Z7 469 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 LRRC40Q9H9A6 602 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 ZNF408Q9H9D4 720 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 ACSS2Q9NR19 701 aa18.37■□□□□ 0.53
VIM-206ENST00000487938 GOLGA8TH3BQL2 631 aa18.36■□□□□ 0.53
VIM-206ENST00000487938 XPOTO43592 962 aaKnown RBP18.36■□□□□ 0.53
VIM-206ENST00000487938 EPHB1P54762 984 aa18.36■□□□□ 0.53
VIM-206ENST00000487938 IQSEC1Q6DN90 963 aa18.36■□□□□ 0.53
VIM-206ENST00000487938 NPWQ8N729 165 aa18.36■□□□□ 0.53
VIM-206ENST00000487938 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.36■□□□□ 0.533e-7■■■■■ 36.2
VIM-206ENST00000487938 SMG8Q8ND04 991 aaKnown RBP18.36■□□□□ 0.53
VIM-206ENST00000487938 SLC2A13Q96QE2 648 aa18.36■□□□□ 0.53
VIM-206ENST00000487938 DNAI2Q9GZS0 605 aa18.36■□□□□ 0.53
VIM-206ENST00000487938 CYP4F11Q9HBI6 524 aa18.36■□□□□ 0.53
VIM-206ENST00000487938 UBP1Q9NZI7 540 aa18.36■□□□□ 0.53
VIM-206ENST00000487938 TIMM13Q9Y5L4 95 aaPredicted RBP18.36■□□□□ 0.53
VIM-206ENST00000487938 CCDC78A2IDD5 438 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 ZMPSTE24O75844 475 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 AP2A1O95782 977 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 SPRP35270 261 aaPredicted RBP18.35■□□□□ 0.53
VIM-206ENST00000487938 PGGT1BP53609 377 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 TPI1P60174 286 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 XKR4Q5GH76 650 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 ACVR1CQ8NER5 493 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 SYT17Q9BSW7 474 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 PPP1R12CQ9BZL4 782 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 PRDM16Q9HAZ2 1276 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 CHRAC1Q9NRG0 131 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 DNAJC28Q9NX36 388 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 BFARQ9NZS9 450 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 DNAH12Q6ZR08 3092 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 ZCWPW2A0A1B0GU75 182 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 MAP3K13O43283 966 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 PDE5AO76074 875 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 NCAM1P13591 858 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 SP100P23497 879 aaPredicted RBP18.35■□□□□ 0.53
VIM-206ENST00000487938 CD68P34810 354 aaPredicted RBP18.35■□□□□ 0.53
VIM-206ENST00000487938 HARS2P49590 506 aaKnown RBP18.35■□□□□ 0.53
VIM-206ENST00000487938 COPAP53621 1224 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 ANKRD20A4Q4UJ75 823 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 GPRIN1Q7Z2K8 1008 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 PHTF2Q8N3S3 785 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 TOP6BLQ8N6T0 577 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 ZNF781Q8N8C0 355 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 PYDC1Q8WXC3 89 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 KCTD13Q8WZ19 329 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 STN1Q9H668 368 aaKnown RBP18.35■□□□□ 0.53
VIM-206ENST00000487938 WDR6Q9NNW5 1121 aaKnown RBP18.35■□□□□ 0.53
VIM-206ENST00000487938 NDE1Q9NXR1 346 aa18.35■□□□□ 0.53
VIM-206ENST00000487938 A0A096LPK6 155 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 CCL15-CCL14A0A0B4J2E2 113 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 USP17L7P0C7H9 530 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 AXLP30530 894 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 ZBTB17Q13105 803 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 LBRQ14739 615 aaKnown RBP18.34■□□□□ 0.53
VIM-206ENST00000487938 CCL15Q16663 113 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 CCDC153Q494R4 210 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 IZUMO2Q6UXV1 221 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 TMEM135Q86UB9 458 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 MLPHQ9BV36 600 aaPredicted RBP18.34■□□□□ 0.53
VIM-206ENST00000487938 COG4Q9H9E3 785 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 CRTAC1Q9NQ79 661 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 DDX43Q9NXZ2 648 aaKnown RBP18.34■□□□□ 0.53
VIM-206ENST00000487938 CPSF2Q9P2I0 782 aaKnown RBP18.34■□□□□ 0.53
VIM-206ENST00000487938 SF3B1O75533 1304 aaKnown RBP eCLIP18.34■□□□□ 0.534e-7■■■■■ 40.1
VIM-206ENST00000487938 MBLAC1A4D2B0 266 aaPredicted RBP18.34■□□□□ 0.53
VIM-206ENST00000487938 DCXO43602 365 aa18.34■□□□□ 0.53
VIM-206ENST00000487938 HSPA4LO95757 839 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms