RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 MED24O75448 989 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 RECKO95980 971 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 NME1P15531 152 aaKnown RBP5.67□□□□□ -1.5
PTPN4-210ENST00000485247 MATR3P43243 847 aaKnown RBP eCLIP5.67□□□□□ -1.5
PTPN4-210ENST00000485247 NPTX2P47972 431 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 PDE6CP51160 858 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 TPMTP51580 245 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 PEX3P56589 373 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 RPL10AP62906 217 aaKnown RBP5.67□□□□□ -1.5
PTPN4-210ENST00000485247 SSRP1Q08945 709 aaKnown RBP5.67□□□□□ -1.5
PTPN4-210ENST00000485247 NOLC1Q14978 699 aaKnown RBP eCLIP5.67□□□□□ -1.5
PTPN4-210ENST00000485247 CALCRLQ16602 461 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 CLEC16AQ2KHT3 1053 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 ANO4Q32M45 955 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 LINC00303Q3SY05 128 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 C9orf57Q5W0N0 161 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 WSCD1Q658N2 575 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 GALNT17Q6IS24 598 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 CCDC81Q6ZN84 652 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 Q6ZUG5 572 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 FAM124AQ86V42 546 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 CACUL1Q86Y37 369 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 EID2Q8N6I1 236 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 DCBLD1Q8N8Z6 715 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 SLC38A3Q99624 504 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 NAP1L4Q99733 375 aaKnown RBP5.67□□□□□ -1.5
PTPN4-210ENST00000485247 PYM1Q9BRP8 204 aaKnown RBP5.67□□□□□ -1.5
PTPN4-210ENST00000485247 DPH1Q9BZG8 443 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 MKRN2Q9H000 416 aaKnown RBP5.67□□□□□ -1.5
PTPN4-210ENST00000485247 PLEKHA5Q9HAU0 1116 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 TM9SF3Q9HD45 589 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 USP36Q9P275 1121 aaKnown RBP5.67□□□□□ -1.5
PTPN4-210ENST00000485247 CFAP97Q9P2B7 532 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 DSEQ9UL01 958 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 PCDHB6Q9Y5E3 794 aa5.67□□□□□ -1.5
PTPN4-210ENST00000485247 A0A1B0GTQ1 180 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 PRRT4C9JH25 899 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 PIRO00625 290 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 TNFRSF10CO14798 259 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 XPOTO43592 962 aaKnown RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 TOM1L1O75674 476 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 MT-CO3P00414 261 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 ITGAVP06756 1048 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 POU3F2P20265 443 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 ABCB4P21439 1286 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 ACAT1P24752 427 aaKnown RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 OXTRP30559 389 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 CTSKP43235 329 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 ZNF165P49910 485 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 GABREP78334 506 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 SLC7A9P82251 487 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 NFE2Q16621 373 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 FUT11Q495W5 492 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 EARS2Q5JPH6 523 aaKnown RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 SPATA1Q5VX52 437 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 SYDE1Q6ZW31 735 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 ADAT2Q7Z6V5 191 aaKnown RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 TMEM25Q86YD3 366 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 TMPRSS6Q8IU80 811 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 SCN4BQ8IWT1 228 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 BHLHE22Q8NFJ8 381 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 SCFD1Q8WVM8 642 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 KIFAP3Q92845 792 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 SIPA1Q96FS4 1042 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 TCTN2Q96GX1 697 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 NUP58Q9BVL2 599 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 C6orf106Q9H6K1 298 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 KMT5AQ9NQR1 393 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 DNAJC17Q9NVM6 304 aaKnown RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 TRPM5Q9NZQ8 1165 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 TBC1D14Q9P2M4 693 aa5.66□□□□□ -1.5
PTPN4-210ENST00000485247 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.66□□□□□ -1.5
PTPN4-210ENST00000485247 FITM1A5D6W6 292 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 NOTOA8MTQ0 251 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 SLC16A4O15374 487 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 CLDN3O15551 220 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 HOXC11O43248 304 aaPredicted RBP5.65□□□□□ -1.5
PTPN4-210ENST00000485247 PAPSS1O43252 624 aaPredicted RBP5.65□□□□□ -1.5
PTPN4-210ENST00000485247 DFNA5O60443 496 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 USP12O75317 370 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 CLEC3AO75596 197 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 DEXIO95424 95 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 PRAMEF1O95521 474 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 TSPAN15O95858 294 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 CLTAP09496 248 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 MBL2P11226 248 aaPredicted RBP5.65□□□□□ -1.5
PTPN4-210ENST00000485247 ACADMP11310 421 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 CKMT2P17540 419 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 ITGB6P18564 788 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 ACSL1P33121 698 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 CCNFP41002 786 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 ERVPABLB-1P60509 514 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 RACK1P63244 317 aaKnown RBP5.65□□□□□ -1.5
PTPN4-210ENST00000485247 TSPY1Q01534 308 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 ILKQ13418 452 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 PDIA5Q14554 519 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 STARD3Q14849 445 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 NR0B2Q15466 257 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 IGFBP7Q16270 282 aa5.65□□□□□ -1.5
PTPN4-210ENST00000485247 CCDC142Q17RM4 750 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms