RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 AEBP2Q6ZN18 517 aaPredicted RBP21.53■■□□□ 1.04
PTPN4-210ENST00000485247 CHIC1Q5VXU3 224 aa20.69■□□□□ 0.9
PTPN4-210ENST00000485247 PHF23Q9BUL5 403 aaPredicted RBP18.22■□□□□ 0.51
PTPN4-210ENST00000485247 SENP3Q9H4L4 574 aaPredicted RBP18.22■□□□□ 0.51
PTPN4-210ENST00000485247 FOXD1Q16676 465 aa17■□□□□ 0.31
PTPN4-210ENST00000485247 PLPPR3Q6T4P5 718 aa16.63■□□□□ 0.25
PTPN4-210ENST00000485247 PPP6R1Q9UPN7 881 aa16.17■□□□□ 0.18
PTPN4-210ENST00000485247 ADRA2BP18089 450 aa16.11■□□□□ 0.17
PTPN4-210ENST00000485247 PIAS4Q8N2W9 510 aaPredicted RBP15.93■□□□□ 0.14
PTPN4-210ENST00000485247 MSH5O43196 834 aa15.73■□□□□ 0.11
PTPN4-210ENST00000485247 POTEDQ86YR6 584 aa14.89□□□□□ -0.03
PTPN4-210ENST00000485247 MAPK8IP2Q13387 824 aaPredicted RBP14.72□□□□□ -0.05
PTPN4-210ENST00000485247 PPP4R3CPQ6ZMV5 832 aa14.65□□□□□ -0.06
PTPN4-210ENST00000485247 SCAF1Q9H7N4 1312 aaKnown RBP14.63□□□□□ -0.07
PTPN4-210ENST00000485247 DMRT2Q9Y5R5 561 aa14.53□□□□□ -0.08
PTPN4-210ENST00000485247 CNKSR2Q8WXI2 1034 aa14.28□□□□□ -0.12
PTPN4-210ENST00000485247 HOXD11P31277 338 aaPredicted RBP14.12□□□□□ -0.15
PTPN4-210ENST00000485247 NCBP3Q53F19 620 aaKnown RBP14.1□□□□□ -0.15
PTPN4-210ENST00000485247 RNF216Q9NWF9 866 aaPredicted RBP14.07□□□□□ -0.16
PTPN4-210ENST00000485247 KCNA4P22459 653 aa14.01□□□□□ -0.17
PTPN4-210ENST00000485247 NPM3O75607 178 aaKnown RBP13.99□□□□□ -0.17
PTPN4-210ENST00000485247 DCAF8L1A6NGE4 600 aa13.87□□□□□ -0.19
PTPN4-210ENST00000485247 NISCHQ9Y2I1 1504 aa13.79□□□□□ -0.2
PTPN4-210ENST00000485247 DNAJC5BQ9UF47 199 aa13.61□□□□□ -0.23
PTPN4-210ENST00000485247 RNF39Q9H2S5 420 aa13.5□□□□□ -0.25
PTPN4-210ENST00000485247 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.41□□□□□ -0.269e-7■□□□□ 10.8
PTPN4-210ENST00000485247 CACNB1Q02641 598 aaPredicted RBP13.31□□□□□ -0.28
PTPN4-210ENST00000485247 SLC4A2P04920 1241 aa13.3□□□□□ -0.28
PTPN4-210ENST00000485247 C1QBPQ07021 282 aaKnown RBP13.27□□□□□ -0.29
PTPN4-210ENST00000485247 SLC4A1APQ9BWU0 796 aaKnown RBP13.24□□□□□ -0.29
PTPN4-210ENST00000485247 U3KPZ7 1027 aaPredicted RBP13.22□□□□□ -0.29
PTPN4-210ENST00000485247 ABCC9O60706 1549 aa13.09□□□□□ -0.31
PTPN4-210ENST00000485247 SPINK5Q9NQ38 1064 aaPredicted RBP12.95□□□□□ -0.34
PTPN4-210ENST00000485247 ZBTB22O15209 634 aa12.94□□□□□ -0.34
PTPN4-210ENST00000485247 FOXD4L1Q9NU39 408 aa12.94□□□□□ -0.34
PTPN4-210ENST00000485247 MYCNP04198 464 aaPredicted RBP12.89□□□□□ -0.35
PTPN4-210ENST00000485247 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.85□□□□□ -0.35
PTPN4-210ENST00000485247 CAPN15O75808 1086 aa12.85□□□□□ -0.35
PTPN4-210ENST00000485247 HNRNPUL2Q1KMD3 747 aaKnown RBP12.85□□□□□ -0.35
PTPN4-210ENST00000485247 SAMD1Q6SPF0 538 aaPredicted RBP12.82□□□□□ -0.36
PTPN4-210ENST00000485247 APLP2Q06481 763 aa12.76□□□□□ -0.37
PTPN4-210ENST00000485247 DSG3P32926 999 aa12.75□□□□□ -0.37
PTPN4-210ENST00000485247 TRHP20396 242 aaPredicted RBP12.73□□□□□ -0.37
PTPN4-210ENST00000485247 ZNF219Q9P2Y4 722 aaPredicted RBP12.69□□□□□ -0.38
PTPN4-210ENST00000485247 ATF5Q9Y2D1 282 aaPredicted RBP12.66□□□□□ -0.38
PTPN4-210ENST00000485247 ABCB7O75027 752 aa12.63□□□□□ -0.39
PTPN4-210ENST00000485247 CSRNP3Q8WYN3 585 aa12.57□□□□□ -0.4
PTPN4-210ENST00000485247 EHMT2Q96KQ7 1210 aa12.55□□□□□ -0.4
PTPN4-210ENST00000485247 CCDC180Q9P1Z9 1646 aa12.51□□□□□ -0.41
PTPN4-210ENST00000485247 ATXN8OSP0DMR3 200 aa12.48□□□□□ -0.41
PTPN4-210ENST00000485247 POLA2Q14181 598 aa12.46□□□□□ -0.41
PTPN4-210ENST00000485247 RB1CC1Q8TDY2 1594 aa12.19□□□□□ -0.46
PTPN4-210ENST00000485247 ZBTB12Q9Y330 459 aaPredicted RBP12.18□□□□□ -0.46
PTPN4-210ENST00000485247 PABPN1Q86U42 306 aaKnown RBP eCLIP12.16□□□□□ -0.46
PTPN4-210ENST00000485247 MKRN4PQ13434 485 aaPredicted RBP12.08□□□□□ -0.48
PTPN4-210ENST00000485247 OSCARQ8IYS5 282 aa12.08□□□□□ -0.48
PTPN4-210ENST00000485247 RBM42Q9BTD8 480 aaKnown RBP12.08□□□□□ -0.48
PTPN4-210ENST00000485247 FBLN2P98095 1184 aa12.02□□□□□ -0.49
PTPN4-210ENST00000485247 DNAJC5Q9H3Z4 198 aa12.02□□□□□ -0.49
PTPN4-210ENST00000485247 NACADO15069 1562 aa11.98□□□□□ -0.49
PTPN4-210ENST00000485247 DCAF8L2P0C7V8 631 aa11.97□□□□□ -0.49
PTPN4-210ENST00000485247 AKT1S1Q96B36 256 aa11.9□□□□□ -0.5
PTPN4-210ENST00000485247 UNC13AQ9UPW8 1703 aa11.89□□□□□ -0.51
PTPN4-210ENST00000485247 SPDYE2BA6NHP3 402 aa11.86□□□□□ -0.51
PTPN4-210ENST00000485247 SPDYE6P0CI01 402 aa11.86□□□□□ -0.51
PTPN4-210ENST00000485247 SPDYE2Q495Y8 402 aa11.86□□□□□ -0.51
PTPN4-210ENST00000485247 BICRAQ9NZM4 1560 aa11.86□□□□□ -0.51
PTPN4-210ENST00000485247 CECR2Q9BXF3 1484 aa11.83□□□□□ -0.52
PTPN4-210ENST00000485247 REM2Q8IYK8 340 aaPredicted RBP11.81□□□□□ -0.52
PTPN4-210ENST00000485247 SSUH2Q9Y2M2 353 aa11.78□□□□□ -0.52
PTPN4-210ENST00000485247 CC2D2AQ9P2K1 1620 aa11.76□□□□□ -0.53
PTPN4-210ENST00000485247 ZNF692Q9BU19 519 aaPredicted RBP11.76□□□□□ -0.53
PTPN4-210ENST00000485247 CHRDL2Q6WN34 429 aa11.74□□□□□ -0.53
PTPN4-210ENST00000485247 POTEHQ6S545 545 aa11.71□□□□□ -0.53
PTPN4-210ENST00000485247 PITPNM1O00562 1244 aa11.7□□□□□ -0.54
PTPN4-210ENST00000485247 MYO15BQ96JP2 1530 aa11.62□□□□□ -0.55
PTPN4-210ENST00000485247 EIF4G1Q04637 1599 aaKnown RBP11.62□□□□□ -0.55
PTPN4-210ENST00000485247 SPDYE4A6NLX3 237 aa11.6□□□□□ -0.55
PTPN4-210ENST00000485247 SHROOM4Q9ULL8 1493 aa11.59□□□□□ -0.55
PTPN4-210ENST00000485247 PIP4P2Q8N4L2 257 aa11.56□□□□□ -0.56
PTPN4-210ENST00000485247 SPDYE1Q8NFV5 336 aaPredicted RBP11.56□□□□□ -0.56
PTPN4-210ENST00000485247 CLEC11AQ9Y240 323 aa11.54□□□□□ -0.56
PTPN4-210ENST00000485247 FXR2P51116 673 aaKnown RBP eCLIP11.53□□□□□ -0.56
PTPN4-210ENST00000485247 SCRIBQ14160 1630 aa11.46□□□□□ -0.58
PTPN4-210ENST00000485247 CUX2O14529 1486 aa11.43□□□□□ -0.58
PTPN4-210ENST00000485247 PROM2Q8N271 834 aa11.42□□□□□ -0.58
PTPN4-210ENST00000485247 PRR29P0C7W0 189 aa11.38□□□□□ -0.59
PTPN4-210ENST00000485247 PRKAR2AP13861 404 aaKnown RBP11.38□□□□□ -0.59
PTPN4-210ENST00000485247 FKBP8Q14318 412 aa11.35□□□□□ -0.59
PTPN4-210ENST00000485247 CHADLQ6NUI6 762 aa11.35□□□□□ -0.59
PTPN4-210ENST00000485247 TRIM41Q8WV44 630 aa11.35□□□□□ -0.59
PTPN4-210ENST00000485247 ERCC6Q03468 1493 aa11.33□□□□□ -0.6
PTPN4-210ENST00000485247 STAG3Q9UJ98 1225 aa11.31□□□□□ -0.6
PTPN4-210ENST00000485247 ZCCHC6Q5VYS8 1495 aaKnown RBP11.31□□□□□ -0.6
PTPN4-210ENST00000485247 DCAF1Q9Y4B6 1507 aa11.3□□□□□ -0.6
PTPN4-210ENST00000485247 CREBZFQ9NS37 354 aa11.24□□□□□ -0.61
PTPN4-210ENST00000485247 HAX1O00165 279 aa11.21□□□□□ -0.61
PTPN4-210ENST00000485247 EVX2Q03828 476 aa11.18□□□□□ -0.62
PTPN4-210ENST00000485247 FARP1Q9Y4F1 1045 aaPredicted RBP11.18□□□□□ -0.62
PTPN4-210ENST00000485247 C19orf67A6NJJ6 358 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms