RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 FBXO44Q9H4M3 255 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 ASNSD1Q9NWL6 643 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 COMMD8Q9NX08 183 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 OSER1Q9NX31 292 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 SALL4Q9UJQ4 1053 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 KLK13Q9UKR3 277 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 CABIN1Q9Y6J0 2220 aa12.59□□□□□ -0.39
PTPRF-208ENST00000437607 SMG1Q96Q15 3661 aaKnown RBP12.59□□□□□ -0.39
PTPRF-208ENST00000437607 IGSF10Q6WRI0 2623 aa12.58□□□□□ -0.39
PTPRF-208ENST00000437607 BPTFQ12830 3046 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 TCRBV5S1A1TA0A578 114 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 GRID2IPA4D2P6 1211 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 SIGLEC16A6NMB1 481 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 SRRM3A6NNA2 597 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-208ENST00000437607 PRRT4C9JH25 899 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 MYO1FO00160 1098 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 SPOPO43791 374 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 CACNG3O60359 315 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 BUB1BO60566 1050 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-208ENST00000437607 PALMO75781 387 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 CFIP05156 583 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 GLI1P08151 1106 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 NDUFV2P19404 249 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 GPD1P21695 349 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 PSMA2P25787 234 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 HOXD12P35452 270 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 ZNF33AQ06730 810 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 MESDQ14696 234 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 DUOXA1Q1HG43 343 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 DNTTIP2Q5QJE6 756 aaKnown RBP12.58□□□□□ -0.4
PTPRF-208ENST00000437607 BTBD8Q5XKL5 378 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 TRMT11Q7Z4G4 463 aaKnown RBP12.58□□□□□ -0.4
PTPRF-208ENST00000437607 SCML4Q8N228 414 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 CLEC4CQ8WTT0 213 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 IRGQQ8WZA9 623 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 ERLEC1Q96DZ1 483 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 SLC6A17Q9H1V8 727 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 IP6K2Q9UHH9 426 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 SLC6A14Q9UN76 642 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 NEUROG3Q9Y4Z2 214 aa12.58□□□□□ -0.4
PTPRF-208ENST00000437607 FASNP49327 2511 aaKnown RBP12.57□□□□□ -0.4
PTPRF-208ENST00000437607 PLXNA2O75051 1894 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 TMEM8BA6NDV4 472 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 NEDD8-MDP1E9PL57 170 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 GRAP2O75791 330 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 FTCDO95954 541 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 LTFP02788 710 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 SERPINF2P08697 491 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 CISD3P0C7P0 127 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 TNNT1P13805 278 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 CD59P13987 128 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 TYRP14679 529 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 SDC4P31431 198 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 MAN1A1P33908 653 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 DPP6P42658 865 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 RNASE9P60153 205 aaKnown RBP12.57□□□□□ -0.4
PTPRF-208ENST00000437607 ETF1P62495 437 aaKnown RBP12.57□□□□□ -0.4
PTPRF-208ENST00000437607 SIM1P81133 766 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-208ENST00000437607 PPP1R15BQ5SWA1 713 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 GRAMD4Q6IC98 578 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 SLC36A4Q6YBV0 504 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 SCUBE3Q8IX30 993 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 ARHGAP18Q8N392 663 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 EMC1Q8N766 993 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 JOSD2Q8TAC2 188 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 CEP76Q8TAP6 659 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 FNIP1Q8TF40 1166 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 ZCCHC14Q8WYQ9 949 aaKnown RBP12.57□□□□□ -0.4
PTPRF-208ENST00000437607 BTBD6Q96KE9 485 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 GABRG3Q99928 467 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 GTPBP2Q9BX10 602 aaKnown RBP12.57□□□□□ -0.4
PTPRF-208ENST00000437607 IRX2Q9BZI1 471 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-208ENST00000437607 SLC32A1Q9H598 525 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 NMUR1Q9HB89 426 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 DNAJC17Q9NVM6 304 aaKnown RBP12.57□□□□□ -0.4
PTPRF-208ENST00000437607 MARK1Q9P0L2 795 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 DNAI1Q9UI46 699 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 STAP1Q9ULZ2 295 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 CYP8B1Q9UNU6 501 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 MSRB2Q9Y3D2 182 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 RAD54BQ9Y620 910 aa12.57□□□□□ -0.4
PTPRF-208ENST00000437607 CTAGE9A4FU28 777 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 TMEM191CA6NGB0 347 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 WASH3PC4AMC7 463 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 ARHGAP33O14559 1287 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 CAPN9O14815 690 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 MDM4O15151 490 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 GJB3O75712 270 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 GABBR2O75899 941 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 PROSCO94903 275 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 CAPNS1P04632 268 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 CASQ1P31415 396 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 FLT3P36888 993 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 RPL7AP62424 266 aaKnown RBP12.56□□□□□ -0.4
PTPRF-208ENST00000437607 PIGHQ14442 188 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-208ENST00000437607 PREPLQ4J6C6 727 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-208ENST00000437607 SYT10Q6XYQ8 523 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 TPGS1Q6ZTW0 290 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 PEX26Q7Z412 305 aa12.56□□□□□ -0.4
PTPRF-208ENST00000437607 MINDY1Q8N5J2 469 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms