RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PGLYRP2Q96PD5 576 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TAAR1Q96RJ0 339 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 NPAS2Q99743 824 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 HEPHQ9BQS7 1158 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 MSTO1Q9BUK6 570 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TARS2Q9BW92 718 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 ZC3H12CQ9C0D7 883 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 MTMR12Q9C0I1 747 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 NIF3L1Q9GZT8 377 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 PDZD7Q9H5P4 517 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 GABBR1Q9UBS5 961 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 FBXO40Q9UH90 709 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 CCNL1Q9UK58 526 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 CCPG1Q9ULG6 757 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 SLC8A2Q9UPR5 921 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TMED5Q9Y3A6 229 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 FAM32AQ9Y421 112 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 HES2Q9Y543 173 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TRIM17Q9Y577 477 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 AP4S1Q9Y587 144 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 CORINQ9Y5Q5 1042 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 PTPRFP10586 1907 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TCAF2A6NFQ2 919 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 ZNF701M0R085 212 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 SOCS2O14508 198 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 PPEF1O14829 653 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 GRID2O43424 1007 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 MYCLP12524 364 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 CKMT2P17540 419 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TPSB2P20231 275 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 MX2P20592 715 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 POLR2BP30876 1174 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 ASPAP45381 313 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 RAP1GAPP47736 663 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 RAB15P59190 212 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TGFB2P61812 414 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 YWHAEP62258 255 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 IRF9Q00978 393 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 NSUN2Q08J23 767 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS39-202ENST00000348544 BNIP3Q12983 259 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 ITGA7Q13683 1181 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TPSAB1Q15661 275 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 CA9Q16790 459 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TREML2Q5T2D2 321 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 CYS1Q717R9 158 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 CPSF7Q8N684 471 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 SYTL5Q8TDW5 730 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 ARNTL2Q8WYA1 636 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 ERLEC1Q96DZ1 483 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 TMA16Q96EY4 203 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 DOK1Q99704 481 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 GATA5Q9BWX5 397 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 NPLQ9BXD5 320 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 GLIS2Q9BZE0 524 aaPredicted RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 BCAP29Q9UHQ4 241 aa6.94□□□□□ -1.3
VPS39-202ENST00000348544 IPO11Q9UI26 975 aaKnown RBP6.94□□□□□ -1.3
VPS39-202ENST00000348544 FER1L6Q2WGJ9 1857 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TESPA1A2RU30 521 aaPredicted RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 TRIM64A6NGJ6 449 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TRIM38O00635 465 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 DLGAP1O14490 977 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 SULT1C4O75897 302 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 CD19P15391 556 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 PROZP22891 400 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TYK2P29597 1187 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 SFNP31947 248 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 BMXP51813 675 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 BCAR1P56945 870 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 PRAMEP78395 509 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 KRT76Q01546 638 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 GALNT2Q10471 571 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 PMS2P3Q13401 168 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 RFTN1Q14699 578 aaPredicted RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 PGM5Q15124 567 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 CDO1Q16878 200 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TRAPPC3LQ5T215 181 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TMEM26Q6ZUK4 368 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 ILDR2Q71H61 639 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 SETD3Q86TU7 594 aaPredicted RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 SP8Q8IXZ3 490 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TMEM130Q8N3G9 435 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 DDHD1Q8NEL9 900 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 MCPH1Q8NEM0 835 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 ADAMTS16Q8TE57 1224 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TFAP2CQ92754 450 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TMEM143Q96AN5 459 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 THAP11Q96EK4 314 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 SGF29Q96ES7 293 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 MCRS1Q96EZ8 462 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TRPV6Q9H1D0 765 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TDRD3Q9H7E2 651 aaKnown RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 NOL11Q9H8H0 719 aaKnown RBP6.93□□□□□ -1.3
VPS39-202ENST00000348544 ZBTB26Q9HCK0 441 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 SNX15Q9NRS6 342 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TCEAL9Q9UHQ7 104 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 SYNPO2Q9UMS6 1093 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 SNX13Q9Y5W8 968 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 LY75O60449 1722 aa6.93□□□□□ -1.3
VPS39-202ENST00000348544 TRIM64BA6NI03 449 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms