RNA–Protein interactions for RNA: YPR135W

CTF4, Transcript of Chromatin-associated protein, yeastyeast

Gene CTF4, Length 2,784 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CTF4YPR135W BUD9P53226 547 aa2.89□□□□□ -1.95
CTF4YPR135W NHA1Q99271 985 aa2.89□□□□□ -1.95
CTF4YPR135W NUP157P40064 1391 aaKnown RBP2.89□□□□□ -1.95
CTF4YPR135W SUP45P12385 437 aaKnown RBP2.89□□□□□ -1.95
CTF4YPR135W YAP3P38749 330 aa2.89□□□□□ -1.95
CTF4YPR135W Q0182Q9ZZW1 134 aa2.89□□□□□ -1.95
CTF4YPR135W YBT1P32386 1661 aa2.88□□□□□ -1.95
CTF4YPR135W NUP188P52593 1655 aaKnown RBP2.88□□□□□ -1.95
CTF4YPR135W HAP1P0CE41 1502 aa2.88□□□□□ -1.95
CTF4YPR135W RDS2P19541 446 aaKnown RBP2.88□□□□□ -1.95
CTF4YPR135W INP52P50942 1183 aa2.88□□□□□ -1.95
CTF4YPR135W NTH2P35172 780 aa2.88□□□□□ -1.95
CTF4YPR135W PRK1P40494 810 aa2.88□□□□□ -1.95
CTF4YPR135W IRC24P40580 263 aa2.88□□□□□ -1.95
CTF4YPR135W RIM21P48565 533 aa2.88□□□□□ -1.95
CTF4YPR135W GAS5Q08193 484 aa2.88□□□□□ -1.95
CTF4YPR135W RPP1AP05318 106 aaPredicted RBP2.87□□□□□ -1.95
CTF4YPR135W MCM1P11746 286 aa2.87□□□□□ -1.95
CTF4YPR135W THI12P42883 340 aa2.87□□□□□ -1.95
CTF4YPR135W THI5P43534 340 aa2.87□□□□□ -1.95
CTF4YPR135W THI11P47183 340 aa2.87□□□□□ -1.95
CTF4YPR135W THI13Q07748 340 aa2.87□□□□□ -1.95
CTF4YPR135W MTO1P53070 669 aa2.87□□□□□ -1.95
CTF4YPR135W NAR1P23503 491 aaKnown RBP2.86□□□□□ -1.95
CTF4YPR135W YFL034WP43564 1073 aa2.86□□□□□ -1.95
CTF4YPR135W YMR074CQ04773 145 aa2.86□□□□□ -1.95
CTF4YPR135W PDI1P17967 522 aaKnown RBP2.86□□□□□ -1.95
CTF4YPR135W HEH2Q03281 663 aa2.86□□□□□ -1.95
CTF4YPR135W IML1P47170 1584 aa2.85□□□□□ -1.95
CTF4YPR135W AI3P03877 415 aa2.85□□□□□ -1.95
CTF4YPR135W GIS4Q04233 774 aa2.85□□□□□ -1.95
CTF4YPR135W SEC7P11075 2009 aaKnown RBP2.85□□□□□ -1.95
CTF4YPR135W SSA1P10591 642 aaKnown RBP2.84□□□□□ -1.95
CTF4YPR135W RRM3P38766 723 aa2.84□□□□□ -1.95
CTF4YPR135W BCK1Q01389 1478 aa2.84□□□□□ -1.95
CTF4YPR135W VMR1P38735 1592 aa2.84□□□□□ -1.95
CTF4YPR135W NCL1P38205 684 aaKnown RBP2.84□□□□□ -1.95
CTF4YPR135W CYT1P07143 309 aa2.83□□□□□ -1.96
CTF4YPR135W PGM1P33401 570 aaKnown RBP2.83□□□□□ -1.96
CTF4YPR135W RPN1P38764 993 aaKnown RBP2.83□□□□□ -1.96
CTF4YPR135W AVT1P47082 602 aa2.83□□□□□ -1.96
CTF4YPR135W STH1P32597 1359 aa2.83□□□□□ -1.96
CTF4YPR135W LEU3P08638 886 aa2.83□□□□□ -1.96
CTF4YPR135W SAC7P17121 654 aa2.83□□□□□ -1.96
CTF4YPR135W CUS1Q02554 436 aaPredicted RBP2.83□□□□□ -1.96
CTF4YPR135W YRF1-2P40105 1681 aa2.83□□□□□ -1.96
CTF4YPR135W COQ2P32378 372 aa2.83□□□□□ -1.96
CTF4YPR135W NAB2P32505 525 aaKnown RBP RIP-Chip data2.83□□□□□ -1.96not detected
CTF4YPR135W YKR073CP36153 106 aa2.83□□□□□ -1.96
CTF4YPR135W YJL007CP47080 104 aa2.83□□□□□ -1.96
CTF4YPR135W ENO1P00924 437 aaKnown RBP2.82□□□□□ -1.96
CTF4YPR135W YNR040WP53736 256 aa2.82□□□□□ -1.96
CTF4YPR135W TSC13Q99190 310 aa2.82□□□□□ -1.96
CTF4YPR135W TRP3P00937 484 aa2.82□□□□□ -1.96
CTF4YPR135W ARI1P53111 347 aaKnown RBP2.82□□□□□ -1.96
CTF4YPR135W MRP10O75012 95 aa2.81□□□□□ -1.96
CTF4YPR135W SKP1P52286 194 aa2.81□□□□□ -1.96
CTF4YPR135W MRX10Q05648 414 aa2.81□□□□□ -1.96
CTF4YPR135W LIP5P32875 414 aa2.81□□□□□ -1.96
CTF4YPR135W KAP122P32767 1081 aa2.8□□□□□ -1.96
CTF4YPR135W MED7Q08278 222 aa2.8□□□□□ -1.96
CTF4YPR135W TOS1P38288 455 aa2.8□□□□□ -1.96
CTF4YPR135W KTR7P40504 517 aa2.8□□□□□ -1.96
CTF4YPR135W YLR122CQ12312 125 aa2.8□□□□□ -1.96
CTF4YPR135W SFA1P32771 386 aa2.79□□□□□ -1.96
CTF4YPR135W KAE1P36132 386 aa2.79□□□□□ -1.96
CTF4YPR135W APM2P38700 605 aa2.79□□□□□ -1.96
CTF4YPR135W UTP4Q06679 776 aaKnown RBP2.79□□□□□ -1.96
CTF4YPR135W IDI1P15496 288 aa2.78□□□□□ -1.96
CTF4YPR135W ACS2P52910 683 aaKnown RBP2.78□□□□□ -1.96
CTF4YPR135W HXT5P38695 592 aa2.78□□□□□ -1.96
CTF4YPR135W NGR1P32831 672 aaKnown RBP2.78□□□□□ -1.97
CTF4YPR135W PEP12P32854 288 aa2.78□□□□□ -1.97
CTF4YPR135W SCD5P34758 872 aa2.78□□□□□ -1.97
CTF4YPR135W ATG32P40458 529 aa2.78□□□□□ -1.97
CTF4YPR135W TED1P40533 473 aa2.78□□□□□ -1.97
CTF4YPR135W CTH1P47976 325 aa2.78□□□□□ -1.97
CTF4YPR135W RPC31P17890 251 aa2.77□□□□□ -1.97
CTF4YPR135W RTG2P32608 588 aaKnown RBP2.77□□□□□ -1.97
CTF4YPR135W AKR1P39010 764 aa2.77□□□□□ -1.97
CTF4YPR135W QDR2P40474 542 aa2.77□□□□□ -1.97
CTF4YPR135W TIF1P10081 395 aaKnown RBP2.77□□□□□ -1.97
CTF4YPR135W RSC6P25632 483 aa2.77□□□□□ -1.97
CTF4YPR135W BIM1P40013 344 aa2.77□□□□□ -1.97
CTF4YPR135W YGR130CP53278 816 aa2.77□□□□□ -1.97
CTF4YPR135W URN1Q06525 465 aaKnown RBP2.77□□□□□ -1.97
CTF4YPR135W PDR11P40550 1411 aa2.76□□□□□ -1.97
CTF4YPR135W LEO1P38439 464 aa2.76□□□□□ -1.97
CTF4YPR135W UBP1P25037 809 aa2.76□□□□□ -1.97
CTF4YPR135W PUB1P32588 453 aaKnown RBP RIP-Chip data2.76□□□□□ -1.97not detected
CTF4YPR135W SAF1P38352 637 aa2.76□□□□□ -1.97
CTF4YPR135W RPL34BP40525 121 aaKnown RBP2.76□□□□□ -1.97
CTF4YPR135W AOS1Q06624 347 aa2.76□□□□□ -1.97
CTF4YPR135W TY1A-NL1Q12391 440 aaKnown RBP2.76□□□□□ -1.97
CTF4YPR135W PHO87P25360 923 aa2.75□□□□□ -1.97
CTF4YPR135W NAM7P30771 971 aaKnown RBP2.75□□□□□ -1.97
CTF4YPR135W ITC1P53125 1264 aa2.75□□□□□ -1.97
CTF4YPR135W SOK2P53438 785 aaPredicted RBP2.75□□□□□ -1.97
CTF4YPR135W BRE4Q07660 1125 aa2.75□□□□□ -1.97
CTF4YPR135W GAS4Q08271 471 aa2.75□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 77 ms