RNA–Protein interactions for RNA: YLR207W

HRD3, Transcript of ER membrane protein that plays a central role in ERAD, yeast

Gene HRD3, Length 2,502 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HRD3	YLR207W	YPQ2	Q06328	317 aa		3.18	□□□□□ -1.9
HRD3	YLR207W	UTP4	Q06679	776 aa	Known RBP	3.18	□□□□□ -1.9
HRD3	YLR207W	CDC53	Q12018	815 aa	Known RBP	3.18	□□□□□ -1.9
HRD3	YLR207W	RAD2	P07276	1031 aa		3.17	□□□□□ -1.9
HRD3	YLR207W	CYC8	P14922	966 aa		3.17	□□□□□ -1.9
HRD3	YLR207W	UGA3	P26370	528 aa		3.17	□□□□□ -1.9
HRD3	YLR207W	IRS4	P36115	615 aa	Known RBP	3.17	□□□□□ -1.9
HRD3	YLR207W	AHP1	P38013	176 aa	Known RBP	3.17	□□□□□ -1.9
HRD3	YLR207W	QDR2	P40474	542 aa		3.17	□□□□□ -1.9
HRD3	YLR207W	UBX5	Q06682	500 aa		3.17	□□□□□ -1.9
HRD3	YLR207W	INP54	Q08227	384 aa	Known RBP	3.17	□□□□□ -1.9
HRD3	YLR207W	MCD1	Q12158	566 aa		3.17	□□□□□ -1.9
HRD3	YLR207W	STI1	P15705	589 aa	Known RBP RIP-Chip data	3.17	□□□□□ -1.9	not detected
HRD3	YLR207W	VRP1	P37370	817 aa		3.17	□□□□□ -1.9
HRD3	YLR207W	RSC4	Q02206	625 aa		3.17	□□□□□ -1.9
HRD3	YLR207W	HED1	Q03937	162 aa		3.17	□□□□□ -1.9
HRD3	YLR207W	POB3	Q04636	552 aa	Known RBP	3.17	□□□□□ -1.9
HRD3	YLR207W	TSC11	P40061	1430 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	SMC4	Q12267	1418 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	ARG82	P07250	355 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	ISW1	P38144	1129 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	NTA1	P40354	457 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	ALG12	P53730	551 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	YCS4	Q06156	1176 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	CIT2	P08679	460 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	MLF3	P32047	452 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	KAP122	P32767	1081 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	PSY2	P40164	858 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	MTO1	P53070	669 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	3.16	□□□□□ -1.9	not detected
HRD3	YLR207W	SRF1	Q12516	437 aa		3.16	□□□□□ -1.9
HRD3	YLR207W	MSN1	P22148	382 aa		3.15	□□□□□ -1.91
HRD3	YLR207W	KRI1	P42846	591 aa	Known RBP	3.15	□□□□□ -1.91
HRD3	YLR207W	HST3	P53687	447 aa		3.15	□□□□□ -1.91
HRD3	YLR207W	GDE1	Q02979	1223 aa		3.15	□□□□□ -1.91
HRD3	YLR207W	NSE3	Q05541	303 aa		3.15	□□□□□ -1.91
HRD3	YLR207W	SSF2	Q12153	453 aa	Predicted RBP	3.15	□□□□□ -1.91
HRD3	YLR207W	PRP40	P33203	583 aa	Known RBP	3.15	□□□□□ -1.91
HRD3	YLR207W	AIM46	P38885	310 aa		3.15	□□□□□ -1.91
HRD3	YLR207W	TIF6	Q12522	245 aa	Known RBP	3.15	□□□□□ -1.91
HRD3	YLR207W	TY2B-B	Q12491	1770 aa		3.14	□□□□□ -1.91
HRD3	YLR207W	TY1B-DR3	Q99231	1755 aa		3.14	□□□□□ -1.91
HRD3	YLR207W	HXK1	P04806	485 aa	Known RBP	3.14	□□□□□ -1.91
HRD3	YLR207W	SIS1	P25294	352 aa	Known RBP	3.14	□□□□□ -1.91
HRD3	YLR207W	RAD27	P26793	382 aa		3.14	□□□□□ -1.91
HRD3	YLR207W	SWE1	P32944	819 aa		3.14	□□□□□ -1.91
HRD3	YLR207W	SQT1	P35184	431 aa		3.14	□□□□□ -1.91
HRD3	YLR207W	GIP1	P38229	639 aa		3.14	□□□□□ -1.91
HRD3	YLR207W	FAA3	P39002	694 aa		3.14	□□□□□ -1.91
HRD3	YLR207W	IOC3	P43596	787 aa		3.14	□□□□□ -1.91
HRD3	YLR207W	YGR161W-C	Q3E744	92 aa		3.14	□□□□□ -1.91
HRD3	YLR207W	ESC1	Q03661	1658 aa	Known RBP	3.14	□□□□□ -1.91
HRD3	YLR207W	SSB1	P11484	613 aa	Known RBP	3.14	□□□□□ -1.91
HRD3	YLR207W	SSB2	P40150	613 aa	Known RBP	3.14	□□□□□ -1.91
HRD3	YLR207W	JJJ2	P46997	583 aa		3.14	□□□□□ -1.91
HRD3	YLR207W	TDA5	Q06417	326 aa	Known RBP	3.14	□□□□□ -1.91
HRD3	YLR207W	TY1B-BR	Q12193	1756 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	TY1B-GR3	Q12316	1755 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	TY1B-OR	Q92393	1755 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	FLP1	P03870	423 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	KTR2	P33550	425 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	RGD2	P43556	714 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	RSM26	P47141	266 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	MSN5	P52918	1224 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	MON1	P53129	644 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	PRI2	P20457	528 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	IRE1	P32361	1115 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	YNL165W	P53891	406 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	NAN1	Q02931	896 aa	Known RBP	3.13	□□□□□ -1.91
HRD3	YLR207W	BUD21	Q08492	214 aa	Predicted RBP	3.13	□□□□□ -1.91
HRD3	YLR207W	YOR296W	Q08748	1289 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	FAL1	Q12099	399 aa	Known RBP	3.13	□□□□□ -1.91
HRD3	YLR207W	NUP159	P40477	1460 aa		3.13	□□□□□ -1.91
HRD3	YLR207W	VTH1	P40438	1549 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	VTH2	P40890	1549 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	MET6	P05694	767 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	SDH2	P21801	266 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	GRX1	P25373	110 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
HRD3	YLR207W	TIM54	P47045	478 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	RPN4	Q03465	531 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-H	O13535	1793 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-DR5	P0C2I2	1755 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-DR6	P0C2I3	1755 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-LR2	P0C2I5	1755 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-PR2	P0C2J0	1756 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-JR1	P47098	1755 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-ML2	Q03434	1755 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-ER1	Q03612	1755 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-ML1	Q04711	1755 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-GR2	Q12269	1755 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-OL	Q12273	1755 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TY1B-PL	Q12414	1755 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	CDC34	P14682	295 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	AMS1	P22855	1083 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	MCM5	P29496	775 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	BSD2	P38356	321 aa		3.12	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms