RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ATRIPQ8WXE1 791 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 EVI5LQ96CN4 794 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 AP1ARQ63HQ0 302 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 VPS37AQ8NEZ2 397 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 PRR29P0C7W0 189 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 C1orf131Q8NDD1 294 aaKnown RBP4.3□□□□□ -1.72
SCN1A-221ENST00000641996 ARHGEF1Q92888 912 aaKnown RBP4.3□□□□□ -1.72
SCN1A-221ENST00000641996 IPO7O95373 1038 aaKnown RBP4.3□□□□□ -1.72
SCN1A-221ENST00000641996 RASSF8Q8NHQ8 419 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 PKD2Q13563 968 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 SLC26A8Q96RN1 970 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 GTPBP4Q9BZE4 634 aaKnown RBP4.3□□□□□ -1.72
SCN1A-221ENST00000641996 ZRANB2O95218 330 aaKnown RBP eCLIP4.3□□□□□ -1.72
SCN1A-221ENST00000641996 FMNL2Q96PY5 1086 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 SLC52A1Q9NWF4 448 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 UQCRHLA0A096LP55 91 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 UQCRHP07919 91 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 HDGFL1Q5TGJ6 251 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 OTUD6BQ8N6M0 293 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 MRFAP1L1Q96HT8 127 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 ARID1AO14497 2285 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC172P0C7W6 258 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 ANAPC4Q9UJX5 808 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 KIF3CO14782 793 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC65Q8IXS2 484 aa4.3□□□□□ -1.72
SCN1A-221ENST00000641996 KIF5CO60282 957 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 CDR1P51861 262 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 NEXNQ0ZGT2 675 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC91Q7Z6B0 441 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 IPO9Q96P70 1041 aaKnown RBP4.29□□□□□ -1.72
SCN1A-221ENST00000641996 NEBLO76041 1014 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 VASPP50552 380 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-221ENST00000641996 RNF217Q8TC41 542 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 PUF60Q9UHX1 559 aaKnown RBP4.29□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC85CA6NKD9 419 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 ABCD1P33897 745 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 SHTN1A0MZ66 631 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC189A1A4V9 331 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC70Q6NSX1 233 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 PPCSQ9HAB8 311 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 SMC4Q9NTJ3 1288 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 IGBP1P78318 339 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 ARMC9Q7Z3E5 817 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 MRFAP1Q9Y605 127 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 IPO5O00410 1097 aaKnown RBP4.29□□□□□ -1.72
SCN1A-221ENST00000641996 KIF20AO95235 890 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 ATICP31939 592 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 SEPT14Q6ZU15 432 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 CALCOCO1Q9P1Z2 691 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 PPM1FP49593 454 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-221ENST00000641996 IFNLR1Q8IU57 520 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-221ENST00000641996 CHCHD4Q8N4Q1 142 aa4.29□□□□□ -1.72
SCN1A-221ENST00000641996 DBN1Q16643 649 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 DMTNQ08495 405 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 NEUROD6Q96NK8 337 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 KNSTRNQ9Y448 316 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 PSMD2Q13200 908 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 LCA5Q86VQ0 697 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 DDX12PQ92771 950 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 RBM33Q96EV2 1170 aaKnown RBP4.28□□□□□ -1.72
SCN1A-221ENST00000641996 GBP4Q96PP9 640 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 RUFY1Q96T51 708 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 ZNHIT6Q9NWK9 470 aaKnown RBP4.28□□□□□ -1.72
SCN1A-221ENST00000641996 RHBDL3P58872 404 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 TTC30AQ86WT1 665 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 KNL1Q8NG31 2342 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 SSFA2P28290 1259 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 SLC4A10Q6U841 1118 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 U2SURPO15042 1029 aaKnown RBP4.28□□□□□ -1.72
SCN1A-221ENST00000641996 DEUP1Q05D60 604 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 CCDC92Q53HC0 331 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-221ENST00000641996 MYH9P35579 1960 aaKnown RBP4.28□□□□□ -1.72
SCN1A-221ENST00000641996 LIMCH1Q9UPQ0 1083 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 BECN1Q14457 450 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 KIF2CQ99661 725 aa4.28□□□□□ -1.72
SCN1A-221ENST00000641996 NOL10Q9BSC4 688 aaKnown RBP4.28□□□□□ -1.72
SCN1A-221ENST00000641996 PAK3O75914 559 aaPredicted RBP4.28□□□□□ -1.73
SCN1A-221ENST00000641996 TMCO5AQ8N6Q1 288 aa4.28□□□□□ -1.73
SCN1A-221ENST00000641996 GEMIN8Q9NWZ8 242 aaKnown RBP4.27□□□□□ -1.73
SCN1A-221ENST00000641996 RRM1P23921 792 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 ANKRD24Q8TF21 1146 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 TMEM51Q9NW97 253 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 PCM1Q15154 2024 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 USP6NLQ92738 828 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 XBP1P17861 261 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 MLECQ14165 292 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 WDR43Q15061 677 aaKnown RBP eCLIP4.27□□□□□ -1.73
SCN1A-221ENST00000641996 CFAP58Q5T655 872 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 CTNNBL1Q8WYA6 563 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-221ENST00000641996 GTF2F1P35269 517 aaKnown RBP eCLIP4.27□□□□□ -1.73
SCN1A-221ENST00000641996 NBPF10Q6P3W6 841 aaKnown RBP4.27□□□□□ -1.73
SCN1A-221ENST00000641996 RSPH14Q9UHP6 348 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 FKBP15Q5T1M5 1219 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 HELBQ8NG08 1087 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-221ENST00000641996 DHX38Q92620 1227 aaKnown RBP4.27□□□□□ -1.73
SCN1A-221ENST00000641996 FBXO9Q9UK97 447 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-221ENST00000641996 FAM212AQ96EL1 285 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 TMEM165Q9HC07 324 aa4.27□□□□□ -1.73
SCN1A-221ENST00000641996 NFXL1Q6ZNB6 911 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 UBE2Q1Q7Z7E8 422 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms