RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 LYPD8Q6UX82 237 aa8.37□□□□□ -1.07
VRK3-222ENST00000601324 PER1O15534 1290 aaPredicted RBP8.36□□□□□ -1.07
VRK3-222ENST00000601324 DXOO77932 396 aaKnown RBP8.36□□□□□ -1.07
VRK3-222ENST00000601324 LRRN4Q8WUT4 740 aa8.36□□□□□ -1.07
VRK3-222ENST00000601324 ZMYND15Q9H091 742 aa8.36□□□□□ -1.07
VRK3-222ENST00000601324 ITGBL1O95965 494 aaPredicted RBP8.35□□□□□ -1.07
VRK3-222ENST00000601324 MMP16P51512 607 aa8.35□□□□□ -1.07
VRK3-222ENST00000601324 PTPRNQ16849 979 aa8.35□□□□□ -1.07
VRK3-222ENST00000601324 KCNC4Q03721 635 aa8.34□□□□□ -1.07
VRK3-222ENST00000601324 GJD4Q96KN9 370 aaPredicted RBP8.34□□□□□ -1.07
VRK3-222ENST00000601324 SLC6A16Q9GZN6 736 aa8.34□□□□□ -1.07
VRK3-222ENST00000601324 HMX1Q9NP08 348 aaPredicted RBP8.34□□□□□ -1.07
VRK3-222ENST00000601324 PRDM9Q9NQV7 894 aa8.34□□□□□ -1.07
VRK3-222ENST00000601324 EIF4G3O43432 1585 aaKnown RBP8.34□□□□□ -1.07
VRK3-222ENST00000601324 A6NJR5 290 aa8.33□□□□□ -1.08
VRK3-222ENST00000601324 RAD21O60216 631 aa8.33□□□□□ -1.08
VRK3-222ENST00000601324 NKX2-3Q8TAU0 364 aa8.33□□□□□ -1.08
VRK3-222ENST00000601324 CLUAP1Q96AJ1 413 aa8.33□□□□□ -1.08
VRK3-222ENST00000601324 TRIM34Q9BYJ4 488 aa8.33□□□□□ -1.08
VRK3-222ENST00000601324 PRM3Q9NNZ6 103 aa8.33□□□□□ -1.08
VRK3-222ENST00000601324 COG6Q9Y2V7 657 aa8.33□□□□□ -1.08
VRK3-222ENST00000601324 TOPBP1Q92547 1522 aa8.33□□□□□ -1.08
VRK3-222ENST00000601324 CHD1O14646 1710 aa8.32□□□□□ -1.08
VRK3-222ENST00000601324 POM121Q96HA1 1249 aa8.32□□□□□ -1.08
VRK3-222ENST00000601324 CLASP1Q7Z460 1538 aa8.32□□□□□ -1.08
VRK3-222ENST00000601324 F12P00748 615 aaPredicted RBP8.31□□□□□ -1.08
VRK3-222ENST00000601324 NUDT12Q9BQG2 462 aa8.31□□□□□ -1.08
VRK3-222ENST00000601324 NDUFB9Q9Y6M9 179 aa8.31□□□□□ -1.08
VRK3-222ENST00000601324 AQRO60306 1485 aaKnown RBP eCLIP8.31□□□□□ -1.08
VRK3-222ENST00000601324 TARBP1Q13395 1621 aaKnown RBP8.3□□□□□ -1.08
VRK3-222ENST00000601324 S1PR4O95977 384 aa8.3□□□□□ -1.08
VRK3-222ENST00000601324 CCNYL3P0C7X3 344 aa8.3□□□□□ -1.08
VRK3-222ENST00000601324 NR6A1Q15406 480 aa8.3□□□□□ -1.08
VRK3-222ENST00000601324 PROSER2Q86WR7 435 aaPredicted RBP8.29□□□□□ -1.08
VRK3-222ENST00000601324 EPS8L1Q8TE68 723 aa8.29□□□□□ -1.08
VRK3-222ENST00000601324 GDPD2Q9HCC8 539 aa8.29□□□□□ -1.08
VRK3-222ENST00000601324 TBC1D2BQ9UPU7 963 aa8.29□□□□□ -1.08
VRK3-222ENST00000601324 EVA1BQ9NVM1 165 aa8.28□□□□□ -1.08
VRK3-222ENST00000601324 MAP10Q9P2G4 905 aa8.28□□□□□ -1.08
VRK3-222ENST00000601324 CTHP32929 405 aa8.27□□□□□ -1.09
VRK3-222ENST00000601324 ABL2P42684 1182 aa8.27□□□□□ -1.09
VRK3-222ENST00000601324 KCNH2Q12809 1159 aa8.27□□□□□ -1.09
VRK3-222ENST00000601324 PNMA1Q8ND90 353 aa8.27□□□□□ -1.09
VRK3-222ENST00000601324 TOP2AP11388 1531 aaKnown RBP8.26□□□□□ -1.09
VRK3-222ENST00000601324 GPR37L1O60883 481 aa8.26□□□□□ -1.09
VRK3-222ENST00000601324 FNBP4Q8N3X1 1017 aaPredicted RBP8.26□□□□□ -1.09
VRK3-222ENST00000601324 TRAK2O60296 914 aa8.25□□□□□ -1.09
VRK3-222ENST00000601324 GGCXP38435 758 aa8.25□□□□□ -1.09
VRK3-222ENST00000601324 WWC1Q8IX03 1113 aa8.25□□□□□ -1.09
VRK3-222ENST00000601324 CCDC24Q8N4L8 307 aa8.25□□□□□ -1.09
VRK3-222ENST00000601324 FCF1Q9Y324 198 aaKnown RBP8.25□□□□□ -1.09
VRK3-222ENST00000601324 PRDM2Q13029 1718 aa8.24□□□□□ -1.09
VRK3-222ENST00000601324 ABCC8Q09428 1581 aa8.24□□□□□ -1.09
VRK3-222ENST00000601324 IFFO2Q5TF58 517 aa8.24□□□□□ -1.09
VRK3-222ENST00000601324 FKBPLQ9UIM3 349 aa8.24□□□□□ -1.09
VRK3-222ENST00000601324 ZC3H4Q9UPT8 1303 aaKnown RBP8.24□□□□□ -1.09
VRK3-222ENST00000601324 DNMBPQ6XZF7 1577 aa8.23□□□□□ -1.09
VRK3-222ENST00000601324 IRF5Q13568 498 aa8.23□□□□□ -1.09
VRK3-222ENST00000601324 ANKLE1Q8NAG6 615 aa8.23□□□□□ -1.09
VRK3-222ENST00000601324 ARMC2Q8NEN0 867 aa8.23□□□□□ -1.09
VRK3-222ENST00000601324 POLA1P09884 1462 aaPredicted RBP8.22□□□□□ -1.09
VRK3-222ENST00000601324 RNF223E7ERA6 249 aa8.22□□□□□ -1.09
VRK3-222ENST00000601324 UNC93B1Q9H1C4 597 aa8.22□□□□□ -1.09
VRK3-222ENST00000601324 SUPT5HO00267 1087 aaKnown RBP8.21□□□□□ -1.1
VRK3-222ENST00000601324 PPEF1O14829 653 aaPredicted RBP8.21□□□□□ -1.1
VRK3-222ENST00000601324 PTCRAQ6ISU1 281 aaPredicted RBP8.21□□□□□ -1.1
VRK3-222ENST00000601324 PPP1R18Q6NYC8 613 aa8.21□□□□□ -1.1
VRK3-222ENST00000601324 GPKOWQ92917 476 aaPredicted RBP eCLIP8.21□□□□□ -1.1
VRK3-222ENST00000601324 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.21□□□□□ -1.1
VRK3-222ENST00000601324 ZNF330Q9Y3S2 320 aaPredicted RBP8.21□□□□□ -1.1
VRK3-222ENST00000601324 GAPVD1Q14C86 1478 aa8.2□□□□□ -1.1
VRK3-222ENST00000601324 WASHC4Q2M389 1173 aa8.2□□□□□ -1.1
VRK3-222ENST00000601324 NBPF14Q5TI25 921 aa8.2□□□□□ -1.1
VRK3-222ENST00000601324 SNAPC4Q5SXM2 1469 aa8.19□□□□□ -1.1
VRK3-222ENST00000601324 TDRD9Q8NDG6 1382 aaKnown RBP8.19□□□□□ -1.1
VRK3-222ENST00000601324 CCDC88BA6NC98 1476 aa8.19□□□□□ -1.1
VRK3-222ENST00000601324 RAD54L2Q9Y4B4 1467 aa8.19□□□□□ -1.1
VRK3-222ENST00000601324 PDXDC2PQ6P474 469 aa8.18□□□□□ -1.1
VRK3-222ENST00000601324 PLA2G2EQ9NZK7 142 aa8.18□□□□□ -1.1
VRK3-222ENST00000601324 SYNJ1O43426 1573 aa8.18□□□□□ -1.1
VRK3-222ENST00000601324 PLA2G2CQ5R387 149 aa8.17□□□□□ -1.1
VRK3-222ENST00000601324 GPSM3Q9Y4H4 160 aa8.17□□□□□ -1.1
VRK3-222ENST00000601324 MAGI1Q96QZ7 1491 aaPredicted RBP8.17□□□□□ -1.1
VRK3-222ENST00000601324 ZBBXA8MT70 800 aa8.16□□□□□ -1.1
VRK3-222ENST00000601324 ZBTB24O43167 697 aaPredicted RBP8.16□□□□□ -1.1
VRK3-222ENST00000601324 FBXO45P0C2W1 286 aa8.16□□□□□ -1.1
VRK3-222ENST00000601324 VAC14Q08AM6 782 aa8.16□□□□□ -1.1
VRK3-222ENST00000601324 NR1H3Q13133 447 aa8.16□□□□□ -1.1
VRK3-222ENST00000601324 ZNF777Q9ULD5 760 aaPredicted RBP8.16□□□□□ -1.1
VRK3-222ENST00000601324 WDR97A6NE52 1622 aa8.15□□□□□ -1.1
VRK3-222ENST00000601324 ERCC6L2Q5T890 1561 aa8.15□□□□□ -1.1
VRK3-222ENST00000601324 POM121CA8CG34 1229 aa8.15□□□□□ -1.1
VRK3-222ENST00000601324 PTK2Q05397 1052 aa8.15□□□□□ -1.1
VRK3-222ENST00000601324 BAP1Q92560 729 aa8.15□□□□□ -1.1
VRK3-222ENST00000601324 SYNJ2O15056 1496 aa8.14□□□□□ -1.11
VRK3-222ENST00000601324 A0A0G2JS52 829 aa8.14□□□□□ -1.11
VRK3-222ENST00000601324 ARID3CA6NKF2 412 aa8.14□□□□□ -1.11
VRK3-222ENST00000601324 RPIAP49247 311 aa8.14□□□□□ -1.11
VRK3-222ENST00000601324 TRIM32Q13049 653 aa8.14□□□□□ -1.11
VRK3-222ENST00000601324 LINC01559Q495D7 138 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms