RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, human

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-222	ENST00000601324	AEBP2	Q6ZN18	517 aa	Predicted RBP	20.24	■□□□□ 0.83
VRK3-222	ENST00000601324	CHIC1	Q5VXU3	224 aa		20	■□□□□ 0.79
VRK3-222	ENST00000601324	PHF23	Q9BUL5	403 aa	Predicted RBP	17.59	■□□□□ 0.41
VRK3-222	ENST00000601324	SENP3	Q9H4L4	574 aa	Predicted RBP	17.17	■□□□□ 0.34
VRK3-222	ENST00000601324	PLPPR3	Q6T4P5	718 aa		16.34	■□□□□ 0.21
VRK3-222	ENST00000601324	FOXD1	Q16676	465 aa		15.89	■□□□□ 0.13
VRK3-222	ENST00000601324	ADRA2B	P18089	450 aa		15.44	■□□□□ 0.06
VRK3-222	ENST00000601324	PPP6R1	Q9UPN7	881 aa		15.44	■□□□□ 0.06
VRK3-222	ENST00000601324	PIAS4	Q8N2W9	510 aa	Predicted RBP	15.04	■□□□□ -0
VRK3-222	ENST00000601324	MSH5	O43196	834 aa		14.59	□□□□□ -0.07
VRK3-222	ENST00000601324	PPP4R3CP	Q6ZMV5	832 aa		14.41	□□□□□ -0.1
VRK3-222	ENST00000601324	KCNA4	P22459	653 aa		14.32	□□□□□ -0.12
VRK3-222	ENST00000601324	SCAF1	Q9H7N4	1312 aa	Known RBP	14.15	□□□□□ -0.14
VRK3-222	ENST00000601324	NCBP3	Q53F19	620 aa	Known RBP	14.11	□□□□□ -0.15
VRK3-222	ENST00000601324	CNKSR2	Q8WXI2	1034 aa		13.97	□□□□□ -0.17
VRK3-222	ENST00000601324	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.94	□□□□□ -0.18
VRK3-222	ENST00000601324	NPM3	O75607	178 aa	Known RBP	13.89	□□□□□ -0.19
VRK3-222	ENST00000601324	DMRT2	Q9Y5R5	561 aa		13.73	□□□□□ -0.21
VRK3-222	ENST00000601324	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.68	□□□□□ -0.22
VRK3-222	ENST00000601324	RNF216	Q9NWF9	866 aa	Predicted RBP	13.65	□□□□□ -0.22
VRK3-222	ENST00000601324	HOXD11	P31277	338 aa	Predicted RBP	13.54	□□□□□ -0.24
VRK3-222	ENST00000601324	EHMT2	Q96KQ7	1210 aa		13.52	□□□□□ -0.25
VRK3-222	ENST00000601324	DNAJC5B	Q9UF47	199 aa		13.5	□□□□□ -0.25
VRK3-222	ENST00000601324	CSRNP3	Q8WYN3	585 aa		13.28	□□□□□ -0.28
VRK3-222	ENST00000601324	ZBTB22	O15209	634 aa		13.18	□□□□□ -0.3
VRK3-222	ENST00000601324	FOXD4L1	Q9NU39	408 aa		13.13	□□□□□ -0.31
VRK3-222	ENST00000601324	DCAF8L1	A6NGE4	600 aa		13.1	□□□□□ -0.31
VRK3-222	ENST00000601324	SLC4A2	P04920	1241 aa		13.06	□□□□□ -0.32
VRK3-222	ENST00000601324	POTED	Q86YR6	584 aa		12.89	□□□□□ -0.35
VRK3-222	ENST00000601324	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.88	□□□□□ -0.35
VRK3-222	ENST00000601324	MYCN	P04198	464 aa	Predicted RBP	12.85	□□□□□ -0.35
VRK3-222	ENST00000601324		U3KPZ7	1027 aa	Predicted RBP	12.71	□□□□□ -0.37
VRK3-222	ENST00000601324	ATXN8OS	P0DMR3	200 aa		12.67	□□□□□ -0.38
VRK3-222	ENST00000601324	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.64	□□□□□ -0.39
VRK3-222	ENST00000601324	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.64	□□□□□ -0.39
VRK3-222	ENST00000601324	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.6	□□□□□ -0.39
VRK3-222	ENST00000601324	RNF39	Q9H2S5	420 aa		12.51	□□□□□ -0.41
VRK3-222	ENST00000601324	APLP2	Q06481	763 aa		12.46	□□□□□ -0.41
VRK3-222	ENST00000601324	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.46	□□□□□ -0.41
VRK3-222	ENST00000601324	C1QBP	Q07021	282 aa	Known RBP	12.38	□□□□□ -0.43
VRK3-222	ENST00000601324	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.27	□□□□□ -0.45
VRK3-222	ENST00000601324	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.26	□□□□□ -0.45
VRK3-222	ENST00000601324	CAPN15	O75808	1086 aa		12.22	□□□□□ -0.45
VRK3-222	ENST00000601324	TRH	P20396	242 aa	Predicted RBP	12.21	□□□□□ -0.45
VRK3-222	ENST00000601324	POLA2	Q14181	598 aa		12.06	□□□□□ -0.48
VRK3-222	ENST00000601324	CACNB1	Q02641	598 aa	Predicted RBP	12.02	□□□□□ -0.49
VRK3-222	ENST00000601324	ABCB7	O75027	752 aa		12	□□□□□ -0.49
VRK3-222	ENST00000601324	FKBP8	Q14318	412 aa		11.99	□□□□□ -0.49
VRK3-222	ENST00000601324	DSG3	P32926	999 aa		11.97	□□□□□ -0.49
VRK3-222	ENST00000601324	FBLN2	P98095	1184 aa		11.95	□□□□□ -0.5
VRK3-222	ENST00000601324	MKRN4P	Q13434	485 aa	Predicted RBP	11.94	□□□□□ -0.5
VRK3-222	ENST00000601324	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.92	□□□□□ -0.5
VRK3-222	ENST00000601324	SPDYE4	A6NLX3	237 aa		11.78	□□□□□ -0.52
VRK3-222	ENST00000601324	OSCAR	Q8IYS5	282 aa		11.65	□□□□□ -0.54
VRK3-222	ENST00000601324	PROM2	Q8N271	834 aa		11.64	□□□□□ -0.55
VRK3-222	ENST00000601324	SPDYE2B	A6NHP3	402 aa		11.6	□□□□□ -0.55
VRK3-222	ENST00000601324	SPDYE6	P0CI01	402 aa		11.6	□□□□□ -0.55
VRK3-222	ENST00000601324	SPDYE2	Q495Y8	402 aa		11.6	□□□□□ -0.55
VRK3-222	ENST00000601324	ZNF692	Q9BU19	519 aa	Predicted RBP	11.57	□□□□□ -0.56
VRK3-222	ENST00000601324	SSUH2	Q9Y2M2	353 aa		11.54	□□□□□ -0.56
VRK3-222	ENST00000601324	FBXO3	Q9UK99	471 aa		11.53	□□□□□ -0.56
VRK3-222	ENST00000601324	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
VRK3-222	ENST00000601324	RBM42	Q9BTD8	480 aa	Known RBP	11.42	□□□□□ -0.58
VRK3-222	ENST00000601324	VASP	P50552	380 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-222	ENST00000601324	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.32	□□□□□ -0.6
VRK3-222	ENST00000601324	AKT1S1	Q96B36	256 aa		11.32	□□□□□ -0.6
VRK3-222	ENST00000601324	STAG3	Q9UJ98	1225 aa		11.3	□□□□□ -0.6
VRK3-222	ENST00000601324	RTN4	Q9NQC3	1192 aa	Known RBP	11.27	□□□□□ -0.61
VRK3-222	ENST00000601324	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.21	□□□□□ -0.61
VRK3-222	ENST00000601324	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.21	□□□□□ -0.61
VRK3-222	ENST00000601324	REM2	Q8IYK8	340 aa	Predicted RBP	11.2	□□□□□ -0.62
VRK3-222	ENST00000601324	PLCD3	Q8N3E9	789 aa		11.15	□□□□□ -0.62
VRK3-222	ENST00000601324	MIER1	Q8N108	512 aa		11.13	□□□□□ -0.63
VRK3-222	ENST00000601324	CLEC11A	Q9Y240	323 aa		11.12	□□□□□ -0.63
VRK3-222	ENST00000601324	NISCH	Q9Y2I1	1504 aa		11.1	□□□□□ -0.63
VRK3-222	ENST00000601324	KLHL34	Q8N239	644 aa		11.1	□□□□□ -0.63
VRK3-222	ENST00000601324	PLEKHG5	O94827	1062 aa		11.08	□□□□□ -0.64
VRK3-222	ENST00000601324	PITPNM1	O00562	1244 aa		11.07	□□□□□ -0.64
VRK3-222	ENST00000601324	PRR29	P0C7W0	189 aa		11.06	□□□□□ -0.64
VRK3-222	ENST00000601324	SPOCK2	Q92563	424 aa		11.05	□□□□□ -0.64
VRK3-222	ENST00000601324	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.03	□□□□□ -0.64
VRK3-222	ENST00000601324	CREBZF	Q9NS37	354 aa		10.98	□□□□□ -0.65
VRK3-222	ENST00000601324	PKD2	Q13563	968 aa		10.92	□□□□□ -0.66
VRK3-222	ENST00000601324	MNX1	P50219	401 aa	Predicted RBP	10.9	□□□□□ -0.66
VRK3-222	ENST00000601324	NUBP1	P53384	320 aa		10.85	□□□□□ -0.67
VRK3-222	ENST00000601324	CHRDL2	Q6WN34	429 aa		10.85	□□□□□ -0.67
VRK3-222	ENST00000601324	FXR2	P51116	673 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
VRK3-222	ENST00000601324	CHADL	Q6NUI6	762 aa		10.82	□□□□□ -0.68
VRK3-222	ENST00000601324	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.82	□□□□□ -0.68
VRK3-222	ENST00000601324	ECM2	O94769	699 aa	Predicted RBP	10.81	□□□□□ -0.68
VRK3-222	ENST00000601324	NPM1	P06748	294 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
VRK3-222	ENST00000601324	PRKAR2A	P13861	404 aa	Known RBP	10.79	□□□□□ -0.68
VRK3-222	ENST00000601324	GSE1	Q14687	1217 aa		10.79	□□□□□ -0.68
VRK3-222	ENST00000601324	TRIM41	Q8WV44	630 aa		10.77	□□□□□ -0.69
VRK3-222	ENST00000601324	FAM212A	Q96EL1	285 aa		10.76	□□□□□ -0.69
VRK3-222	ENST00000601324	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.76	□□□□□ -0.69
VRK3-222	ENST00000601324	PIP4P2	Q8N4L2	257 aa		10.75	□□□□□ -0.69
VRK3-222	ENST00000601324	DCAF8	Q5TAQ9	597 aa		10.74	□□□□□ -0.69
VRK3-222	ENST00000601324	RASEF	Q8IZ41	740 aa		10.74	□□□□□ -0.69
VRK3-222	ENST00000601324	DCAF8L2	P0C7V8	631 aa		10.72	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms