RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-208ENST00000563911 WWC1Q8IX03 1113 aa10.56□□□□□ -0.72
HERPUD1-208ENST00000563911 FNBP4Q8N3X1 1017 aaPredicted RBP10.56□□□□□ -0.72
HERPUD1-208ENST00000563911 LRRN4Q8WUT4 740 aa10.56□□□□□ -0.72
HERPUD1-208ENST00000563911 C1orf115Q9H7X2 142 aa10.56□□□□□ -0.72
HERPUD1-208ENST00000563911 ZNF777Q9ULD5 760 aaPredicted RBP10.56□□□□□ -0.72
HERPUD1-208ENST00000563911 CDAN1Q8IWY9 1227 aa10.55□□□□□ -0.72
HERPUD1-208ENST00000563911 CHMP7Q8WUX9 453 aaPredicted RBP10.55□□□□□ -0.72
HERPUD1-208ENST00000563911 ARXQ96QS3 562 aa10.55□□□□□ -0.72
HERPUD1-208ENST00000563911 ARID3AQ99856 593 aa10.55□□□□□ -0.72
HERPUD1-208ENST00000563911 HMX1Q9NP08 348 aaPredicted RBP10.55□□□□□ -0.72
HERPUD1-208ENST00000563911 TBC1D2BQ9UPU7 963 aa10.55□□□□□ -0.72
HERPUD1-208ENST00000563911 FMNL1O95466 1100 aaPredicted RBP10.54□□□□□ -0.72
HERPUD1-208ENST00000563911 BRICD5Q6PL45 260 aa10.54□□□□□ -0.72
HERPUD1-208ENST00000563911 POTEGQ6S5H5 508 aa10.54□□□□□ -0.72
HERPUD1-208ENST00000563911 GJD4Q96KN9 370 aaPredicted RBP10.54□□□□□ -0.72
HERPUD1-208ENST00000563911 USB1Q9BQ65 265 aaKnown RBP10.54□□□□□ -0.72
HERPUD1-208ENST00000563911 ZNF330Q9Y3S2 320 aaPredicted RBP10.54□□□□□ -0.72
HERPUD1-208ENST00000563911 ERCC6L2Q5T890 1561 aa10.53□□□□□ -0.72
HERPUD1-208ENST00000563911 SALL2Q9Y467 1007 aaPredicted RBP10.53□□□□□ -0.72
HERPUD1-208ENST00000563911 NDUFB9Q9Y6M9 179 aa10.53□□□□□ -0.72
HERPUD1-208ENST00000563911 FGD5Q6ZNL6 1462 aa10.53□□□□□ -0.72
HERPUD1-208ENST00000563911 GAPVD1Q14C86 1478 aa10.52□□□□□ -0.73
HERPUD1-208ENST00000563911 POTEMA6NI47 508 aa10.51□□□□□ -0.73
HERPUD1-208ENST00000563911 PER1O15534 1290 aaPredicted RBP10.51□□□□□ -0.73
HERPUD1-208ENST00000563911 COPS2P61201 443 aa10.51□□□□□ -0.73
HERPUD1-208ENST00000563911 DESI1Q6ICB0 168 aa10.51□□□□□ -0.73
HERPUD1-208ENST00000563911 CUX1P39880 1505 aa10.51□□□□□ -0.73
HERPUD1-208ENST00000563911 PTPN5P54829 565 aa10.5□□□□□ -0.73
HERPUD1-208ENST00000563911 THAP11Q96EK4 314 aa10.5□□□□□ -0.73
HERPUD1-208ENST00000563911 TRIM34Q9BYJ4 488 aa10.5□□□□□ -0.73
HERPUD1-208ENST00000563911 SYNJ1O43426 1573 aa10.49□□□□□ -0.73
HERPUD1-208ENST00000563911 NYAP1Q6ZVC0 841 aa10.49□□□□□ -0.73
HERPUD1-208ENST00000563911 SYNJ2O15056 1496 aa10.49□□□□□ -0.73
HERPUD1-208ENST00000563911 GRIN2BQ13224 1484 aa10.49□□□□□ -0.73
HERPUD1-208ENST00000563911 MAGI1Q96QZ7 1491 aaPredicted RBP10.49□□□□□ -0.73
HERPUD1-208ENST00000563911 NR6A1Q15406 480 aa10.48□□□□□ -0.73
HERPUD1-208ENST00000563911 LYPD8Q6UX82 237 aa10.48□□□□□ -0.73
HERPUD1-208ENST00000563911 HOMEZQ8IX15 550 aa10.48□□□□□ -0.73
HERPUD1-208ENST00000563911 EPS8L1Q8TE68 723 aa10.48□□□□□ -0.73
HERPUD1-208ENST00000563911 SPSB2Q99619 263 aa10.47□□□□□ -0.73
HERPUD1-208ENST00000563911 CCDC82Q8N4S0 544 aa10.46□□□□□ -0.73
HERPUD1-208ENST00000563911 JUNDP17535 347 aa10.44□□□□□ -0.74
HERPUD1-208ENST00000563911 IRF5Q13568 498 aa10.44□□□□□ -0.74
HERPUD1-208ENST00000563911 WDR97A6NE52 1622 aa10.44□□□□□ -0.74
HERPUD1-208ENST00000563911 FAM160A2Q8N612 972 aaPredicted RBP10.43□□□□□ -0.74
HERPUD1-208ENST00000563911 MTRQ99707 1265 aa10.43□□□□□ -0.74
HERPUD1-208ENST00000563911 ZPR1O75312 459 aa10.42□□□□□ -0.74
HERPUD1-208ENST00000563911 WASHC4Q2M389 1173 aa10.42□□□□□ -0.74
HERPUD1-208ENST00000563911 MSS51Q4VC12 460 aa10.42□□□□□ -0.74
HERPUD1-208ENST00000563911 PNMA1Q8ND90 353 aa10.42□□□□□ -0.74
HERPUD1-208ENST00000563911 CCDC97Q96F63 343 aaPredicted RBP10.42□□□□□ -0.74
HERPUD1-208ENST00000563911 PLSCR2Q9NRY7 297 aa10.42□□□□□ -0.74
HERPUD1-208ENST00000563911 MYT1LQ9UL68 1186 aa10.42□□□□□ -0.74
HERPUD1-208ENST00000563911 POM121CA8CG34 1229 aa10.41□□□□□ -0.74
HERPUD1-208ENST00000563911 PTPRNQ16849 979 aa10.41□□□□□ -0.74
HERPUD1-208ENST00000563911 CALR3Q96L12 384 aaKnown RBP10.41□□□□□ -0.74
HERPUD1-208ENST00000563911 TLL1O43897 1013 aa10.4□□□□□ -0.74
HERPUD1-208ENST00000563911 GPR37L1O60883 481 aa10.4□□□□□ -0.74
HERPUD1-208ENST00000563911 CTHP32929 405 aa10.4□□□□□ -0.74
HERPUD1-208ENST00000563911 SERPINA10Q9UK55 444 aa10.4□□□□□ -0.74
HERPUD1-208ENST00000563911 CEP170Q5SW79 1584 aa10.39□□□□□ -0.75
HERPUD1-208ENST00000563911 PBRM1Q86U86 1689 aa10.39□□□□□ -0.75
HERPUD1-208ENST00000563911 ADH1BP00325 375 aa10.39□□□□□ -0.75
HERPUD1-208ENST00000563911 VAC14Q08AM6 782 aa10.39□□□□□ -0.75
HERPUD1-208ENST00000563911 IL21Q9HBE4 155 aa10.39□□□□□ -0.75
HERPUD1-208ENST00000563911 PRDM9Q9NQV7 894 aa10.39□□□□□ -0.75
HERPUD1-208ENST00000563911 ABCA5Q8WWZ7 1642 aa10.38□□□□□ -0.75
HERPUD1-208ENST00000563911 DXOO77932 396 aaKnown RBP10.38□□□□□ -0.75
HERPUD1-208ENST00000563911 TJAP1Q5JTD0 557 aa10.38□□□□□ -0.75
HERPUD1-208ENST00000563911 ZNF516Q92618 1163 aa10.38□□□□□ -0.75
HERPUD1-208ENST00000563911 GLMNQ92990 594 aa10.38□□□□□ -0.75
HERPUD1-208ENST00000563911 MAP10Q9P2G4 905 aa10.38□□□□□ -0.75
HERPUD1-208ENST00000563911 F12P00748 615 aaPredicted RBP10.37□□□□□ -0.75
HERPUD1-208ENST00000563911 CCNYL3P0C7X3 344 aa10.37□□□□□ -0.75
HERPUD1-208ENST00000563911 MMP16P51512 607 aa10.37□□□□□ -0.75
HERPUD1-208ENST00000563911 NUP160Q12769 1436 aa10.37□□□□□ -0.75
HERPUD1-208ENST00000563911 NUDT12Q9BQG2 462 aa10.37□□□□□ -0.75
HERPUD1-208ENST00000563911 KIF13AQ9H1H9 1805 aa10.37□□□□□ -0.75
HERPUD1-208ENST00000563911 ABCA10Q8WWZ4 1543 aa10.37□□□□□ -0.75
HERPUD1-208ENST00000563911 GRIN2AQ12879 1464 aa10.36□□□□□ -0.75
HERPUD1-208ENST00000563911 HDGFL1Q5TGJ6 251 aa10.36□□□□□ -0.75
HERPUD1-208ENST00000563911 EVA1BQ9NVM1 165 aa10.35□□□□□ -0.75
HERPUD1-208ENST00000563911 FKBPLQ9UIM3 349 aa10.35□□□□□ -0.75
HERPUD1-208ENST00000563911 KCNH2Q12809 1159 aa10.34□□□□□ -0.75
HERPUD1-208ENST00000563911 CCDC24Q8N4L8 307 aa10.34□□□□□ -0.75
HERPUD1-208ENST00000563911 SLC6A16Q9GZN6 736 aa10.34□□□□□ -0.75
HERPUD1-208ENST00000563911 SHROOM2Q13796 1616 aa10.33□□□□□ -0.76
HERPUD1-208ENST00000563911 FAM69CQ0P6D2 419 aa10.31□□□□□ -0.76
HERPUD1-208ENST00000563911 ARMC2Q8NEN0 867 aa10.31□□□□□ -0.76
HERPUD1-208ENST00000563911 NKX2-3Q8TAU0 364 aa10.31□□□□□ -0.76
HERPUD1-208ENST00000563911 ADAMTS19Q8TE59 1207 aa10.31□□□□□ -0.76
HERPUD1-208ENST00000563911 ADAMTS12P58397 1594 aa10.31□□□□□ -0.76
HERPUD1-208ENST00000563911 EIF4G2P78344 907 aaKnown RBP eCLIP10.3□□□□□ -0.76
HERPUD1-208ENST00000563911 NR1H3Q13133 447 aa10.3□□□□□ -0.76
HERPUD1-208ENST00000563911 SEMA3FQ13275 785 aa10.3□□□□□ -0.76
HERPUD1-208ENST00000563911 HCSTQ9UBK5 93 aa10.3□□□□□ -0.76
HERPUD1-208ENST00000563911 PRG4Q92954 1404 aaPredicted RBP10.3□□□□□ -0.76
HERPUD1-208ENST00000563911 ZC3H4Q9UPT8 1303 aaKnown RBP10.3□□□□□ -0.76
HERPUD1-208ENST00000563911 ZBBXA8MT70 800 aa10.29□□□□□ -0.76
HERPUD1-208ENST00000563911 SOX11P35716 441 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 140.6 ms