RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 TMEM259Q4ZIN3 620 aa11.59□□□□□ -0.55
VIM-207ENST00000495528 PLA2G2EQ9NZK7 142 aa11.59□□□□□ -0.55
VIM-207ENST00000495528 TARBP1Q13395 1621 aaKnown RBP11.59□□□□□ -0.55
VIM-207ENST00000495528 POLA1P09884 1462 aaPredicted RBP11.58□□□□□ -0.56
VIM-207ENST00000495528 RAD54L2Q9Y4B4 1467 aa11.58□□□□□ -0.56
VIM-207ENST00000495528 TDRD9Q8NDG6 1382 aaKnown RBP11.58□□□□□ -0.56
VIM-207ENST00000495528 PPEF1O14829 653 aaPredicted RBP11.57□□□□□ -0.56
VIM-207ENST00000495528 PER1O15534 1290 aaPredicted RBP11.57□□□□□ -0.56
VIM-207ENST00000495528 SOGA1O94964 1423 aa11.57□□□□□ -0.56
VIM-207ENST00000495528 USP17L8P0C7I0 530 aa11.56□□□□□ -0.56
VIM-207ENST00000495528 LRRN4Q8WUT4 740 aa11.56□□□□□ -0.56
VIM-207ENST00000495528 ARAP1Q96P48 1450 aa11.56□□□□□ -0.56
VIM-207ENST00000495528 DXOO77932 396 aaKnown RBP11.55□□□□□ -0.56
VIM-207ENST00000495528 SNRKQ9NRH2 765 aa11.55□□□□□ -0.56
VIM-207ENST00000495528 MMP16P51512 607 aa11.54□□□□□ -0.56
VIM-207ENST00000495528 DESI1Q6ICB0 168 aa11.54□□□□□ -0.56
VIM-207ENST00000495528 PPP1R18Q6NYC8 613 aa11.54□□□□□ -0.56
VIM-207ENST00000495528 CCDC24Q8N4L8 307 aa11.54□□□□□ -0.56
VIM-207ENST00000495528 CHD1O14646 1710 aa11.54□□□□□ -0.56
VIM-207ENST00000495528 LYPD8Q6UX82 237 aa11.52□□□□□ -0.57
VIM-207ENST00000495528 BANK1Q8NDB2 785 aa11.52□□□□□ -0.57
VIM-207ENST00000495528 CHMP7Q8WUX9 453 aaPredicted RBP11.52□□□□□ -0.57
VIM-207ENST00000495528 NUDT12Q9BQG2 462 aa11.52□□□□□ -0.57
VIM-207ENST00000495528 GGCXP38435 758 aa11.51□□□□□ -0.57
VIM-207ENST00000495528 FCF1Q9Y324 198 aaKnown RBP11.51□□□□□ -0.57
VIM-207ENST00000495528 RNF223E7ERA6 249 aa11.5□□□□□ -0.57
VIM-207ENST00000495528 CTHP32929 405 aa11.5□□□□□ -0.57
VIM-207ENST00000495528 PTPRNQ16849 979 aa11.5□□□□□ -0.57
VIM-207ENST00000495528 HMX1Q9NP08 348 aaPredicted RBP11.5□□□□□ -0.57
VIM-207ENST00000495528 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.5□□□□□ -0.57
VIM-207ENST00000495528 SNAPC4Q5SXM2 1469 aa11.5□□□□□ -0.57
VIM-207ENST00000495528 FGD5Q6ZNL6 1462 aa11.5□□□□□ -0.57
VIM-207ENST00000495528 CCNYL3P0C7X3 344 aa11.49□□□□□ -0.57
VIM-207ENST00000495528 MCM6Q14566 821 aa11.49□□□□□ -0.57
VIM-207ENST00000495528 MTMR14Q8NCE2 650 aa11.48□□□□□ -0.57
VIM-207ENST00000495528 MAP10Q9P2G4 905 aa11.48□□□□□ -0.57
VIM-207ENST00000495528 FLIIQ13045 1269 aa11.47□□□□□ -0.57
VIM-207ENST00000495528 EPS8L1Q8TE68 723 aa11.47□□□□□ -0.57
VIM-207ENST00000495528 CUX1P39880 1505 aa11.46□□□□□ -0.57
VIM-207ENST00000495528 NR6A1Q15406 480 aa11.46□□□□□ -0.57
VIM-207ENST00000495528 IFFO2Q5TF58 517 aa11.46□□□□□ -0.57
VIM-207ENST00000495528 EVA1BQ9NVM1 165 aa11.45□□□□□ -0.58
VIM-207ENST00000495528 CLASP1Q7Z460 1538 aa11.45□□□□□ -0.58
VIM-207ENST00000495528 GRIN2BQ13224 1484 aa11.44□□□□□ -0.58
VIM-207ENST00000495528 KCNH2Q12809 1159 aa11.44□□□□□ -0.58
VIM-207ENST00000495528 PTCRAQ6ISU1 281 aaPredicted RBP11.44□□□□□ -0.58
VIM-207ENST00000495528 ANKLE1Q8NAG6 615 aa11.44□□□□□ -0.58
VIM-207ENST00000495528 MAGI1Q96QZ7 1491 aaPredicted RBP11.44□□□□□ -0.58
VIM-207ENST00000495528 F12P00748 615 aaPredicted RBP11.43□□□□□ -0.58
VIM-207ENST00000495528 PLA2G2CQ5R387 149 aa11.43□□□□□ -0.58
VIM-207ENST00000495528 A0A0G2JS52 829 aa11.42□□□□□ -0.58
VIM-207ENST00000495528 GJD4Q96KN9 370 aaPredicted RBP11.42□□□□□ -0.58
VIM-207ENST00000495528 TRIM34Q9BYJ4 488 aa11.42□□□□□ -0.58
VIM-207ENST00000495528 SYNJ2O15056 1496 aa11.42□□□□□ -0.58
VIM-207ENST00000495528 WDR97A6NE52 1622 aa11.42□□□□□ -0.58
VIM-207ENST00000495528 SYNJ1O43426 1573 aa11.41□□□□□ -0.58
VIM-207ENST00000495528 UBTFP17480 764 aaKnown RBP11.41□□□□□ -0.58
VIM-207ENST00000495528 GAPVD1Q14C86 1478 aa11.4□□□□□ -0.58
VIM-207ENST00000495528 UNC93B1Q9H1C4 597 aa11.4□□□□□ -0.58
VIM-207ENST00000495528 ZBTB24O43167 697 aaPredicted RBP11.39□□□□□ -0.59
VIM-207ENST00000495528 C14orf37Q86TY3 774 aa11.39□□□□□ -0.59
VIM-207ENST00000495528 POM121Q96HA1 1249 aa11.39□□□□□ -0.59
VIM-207ENST00000495528 APBB1O00213 710 aa11.38□□□□□ -0.59
VIM-207ENST00000495528 GDPD2Q9HCC8 539 aa11.38□□□□□ -0.59
VIM-207ENST00000495528 TBC1D2BQ9UPU7 963 aa11.38□□□□□ -0.59
VIM-207ENST00000495528 CLUAP1Q96AJ1 413 aa11.37□□□□□ -0.59
VIM-207ENST00000495528 NDUFB9Q9Y6M9 179 aa11.37□□□□□ -0.59
VIM-207ENST00000495528 LINC01559Q495D7 138 aa11.36□□□□□ -0.59
VIM-207ENST00000495528 SUPT5HO00267 1087 aaKnown RBP11.35□□□□□ -0.59
VIM-207ENST00000495528 RAD21O60216 631 aa11.35□□□□□ -0.59
VIM-207ENST00000495528 ABL2P42684 1182 aa11.35□□□□□ -0.59
VIM-207ENST00000495528 LIAT1Q6ZQX7 453 aa11.35□□□□□ -0.59
VIM-207ENST00000495528 BAP1Q92560 729 aa11.35□□□□□ -0.59
VIM-207ENST00000495528 PRM3Q9NNZ6 103 aa11.35□□□□□ -0.59
VIM-207ENST00000495528 FKBPLQ9UIM3 349 aa11.35□□□□□ -0.59
VIM-207ENST00000495528 COG6Q9Y2V7 657 aa11.35□□□□□ -0.59
VIM-207ENST00000495528 ABCA10Q8WWZ4 1543 aa11.35□□□□□ -0.59
VIM-207ENST00000495528 SOCS7O14512 581 aa11.34□□□□□ -0.59
VIM-207ENST00000495528 EMID1Q96A84 441 aaPredicted RBP11.34□□□□□ -0.59
VIM-207ENST00000495528 SLC19A1P41440 591 aa11.33□□□□□ -0.6
VIM-207ENST00000495528 TRIM32Q13049 653 aa11.32□□□□□ -0.6
VIM-207ENST00000495528 PNMA1Q8ND90 353 aa11.32□□□□□ -0.6
VIM-207ENST00000495528 ARMC2Q8NEN0 867 aa11.32□□□□□ -0.6
VIM-207ENST00000495528 PRKD2Q9BZL6 878 aa11.32□□□□□ -0.6
VIM-207ENST00000495528 TIMELESSQ9UNS1 1208 aa11.32□□□□□ -0.6
VIM-207ENST00000495528 PBRM1Q86U86 1689 aa11.31□□□□□ -0.6
VIM-207ENST00000495528 ABCA5Q8WWZ7 1642 aa11.3□□□□□ -0.6
VIM-207ENST00000495528 GRIN2AQ12879 1464 aa11.3□□□□□ -0.6
VIM-207ENST00000495528 ERCC6L2Q5T890 1561 aa11.29□□□□□ -0.6
VIM-207ENST00000495528 WRNQ14191 1432 aaPredicted RBP eCLIP11.29□□□□□ -0.6
VIM-207ENST00000495528 GPR37L1O60883 481 aa11.29□□□□□ -0.6
VIM-207ENST00000495528 CD2BP2O95400 341 aaKnown RBP11.29□□□□□ -0.6
VIM-207ENST00000495528 RPIAP49247 311 aa11.29□□□□□ -0.6
VIM-207ENST00000495528 NBPF14Q5TI25 921 aa11.29□□□□□ -0.6
VIM-207ENST00000495528 SH3BP2P78314 561 aa11.28□□□□□ -0.6
VIM-207ENST00000495528 AGERQ15109 404 aa11.28□□□□□ -0.6
VIM-207ENST00000495528 ZNF511Q8NB15 262 aa11.28□□□□□ -0.6
VIM-207ENST00000495528 NUP160Q12769 1436 aa11.27□□□□□ -0.6
VIM-207ENST00000495528 FOXJ1Q92949 421 aa11.27□□□□□ -0.61
VIM-207ENST00000495528 ZMYND15Q9H091 742 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms