RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 PalldQ9ET54 1408 aa16.92■□□□□ 0.3
Nup88-201ENSMUST00000035283 Ddit3P35639 168 aa16.92■□□□□ 0.3
Nup88-201ENSMUST00000035283 IqubQ8CDK3 788 aa16.92■□□□□ 0.3
Nup88-201ENSMUST00000035283 Prex1Q69ZK0 1650 aa16.91■□□□□ 0.3
Nup88-201ENSMUST00000035283 Exosc9Q9JHI7 438 aaKnown RBP16.91■□□□□ 0.3
Nup88-201ENSMUST00000035283 Ttc37F8VPK0 1563 aa16.9■□□□□ 0.3
Nup88-201ENSMUST00000035283 SkilQ60665 675 aa16.9■□□□□ 0.3
Nup88-201ENSMUST00000035283 Stk26Q99JT2 416 aa16.9■□□□□ 0.3
Nup88-201ENSMUST00000035283 Ehbp1l1Q99MS7 1716 aa16.9■□□□□ 0.3
Nup88-201ENSMUST00000035283 Rbm25B2RY56 838 aaKnown RBP16.9■□□□□ 0.3
Nup88-201ENSMUST00000035283 Nectin2P32507 530 aa16.9■□□□□ 0.3
Nup88-201ENSMUST00000035283 Trpm1Q2TV84 1622 aa16.9■□□□□ 0.3
Nup88-201ENSMUST00000035283 Skint5A7XUY5 1461 aa16.89■□□□□ 0.3
Nup88-201ENSMUST00000035283 Lrrc7Q80TE7 1490 aa16.89■□□□□ 0.3
Nup88-201ENSMUST00000035283 CenpjQ569L8 1344 aa16.89■□□□□ 0.29
Nup88-201ENSMUST00000035283 Paxip1Q6NZQ4 1056 aa16.89■□□□□ 0.29
Nup88-201ENSMUST00000035283 Abca9Q8K449 1623 aa16.89■□□□□ 0.29
Nup88-201ENSMUST00000035283 Kif20aP97329 887 aa16.89■□□□□ 0.29
Nup88-201ENSMUST00000035283 Hs1bp3Q3TC93 395 aa16.89■□□□□ 0.29
Nup88-201ENSMUST00000035283 MaddQ80U28 1577 aa16.89■□□□□ 0.29
Nup88-201ENSMUST00000035283 Brd1E9PZ26 1189 aaKnown RBP16.88■□□□□ 0.29
Nup88-201ENSMUST00000035283 Ankrd50F7BE84 1390 aa16.88■□□□□ 0.29
Nup88-201ENSMUST00000035283 Senp3Q9EP97 568 aaKnown RBP16.87■□□□□ 0.29
Nup88-201ENSMUST00000035283 Ttc21aQ8C0S4 1314 aa16.87■□□□□ 0.29
Nup88-201ENSMUST00000035283 Hecw2Q6I6G8 1578 aa16.87■□□□□ 0.29
Nup88-201ENSMUST00000035283 Igf1rQ60751 1373 aa16.87■□□□□ 0.29
Nup88-201ENSMUST00000035283 Ncbp3Q8BZR9 615 aaKnown RBP16.87■□□□□ 0.29
Nup88-201ENSMUST00000035283 G3bp1P97855 465 aaKnown RBP16.86■□□□□ 0.29
Nup88-201ENSMUST00000035283 Tmco5bQ80X59 307 aa16.86■□□□□ 0.29
Nup88-201ENSMUST00000035283 Kiaa0556Q8C753 1610 aa16.86■□□□□ 0.29
Nup88-201ENSMUST00000035283 Cavin4A2AMM0 362 aa16.86■□□□□ 0.29
Nup88-201ENSMUST00000035283 Dmrtc1Q9D9R7 182 aa16.86■□□□□ 0.29
Nup88-201ENSMUST00000035283 Ino80Q6ZPV2 1559 aa16.85■□□□□ 0.29
Nup88-201ENSMUST00000035283 Tfip11Q9ERA6 838 aaKnown RBP16.85■□□□□ 0.29
Nup88-201ENSMUST00000035283 Rrp9Q91WM3 475 aaKnown RBP16.85■□□□□ 0.29
Nup88-201ENSMUST00000035283 GorabQ8BRM2 368 aa16.84■□□□□ 0.29
Nup88-201ENSMUST00000035283 Med14A2ABV5 1459 aaKnown RBP16.84■□□□□ 0.29
Nup88-201ENSMUST00000035283 Gm10093D3YYI8 482 aa16.84■□□□□ 0.29
Nup88-201ENSMUST00000035283 Hdac1O09106 482 aaKnown RBP16.84■□□□□ 0.29
Nup88-201ENSMUST00000035283 KnstrnQ9D9Z1 312 aaKnown RBP16.84■□□□□ 0.29
Nup88-201ENSMUST00000035283 FanciQ8K368 1330 aa16.83■□□□□ 0.28
Nup88-201ENSMUST00000035283 Nrxn1Q9CS84 1514 aa16.82■□□□□ 0.28
Nup88-201ENSMUST00000035283 SlkO54988 1233 aa16.82■□□□□ 0.28
Nup88-201ENSMUST00000035283 DekQ7TNV0 380 aaKnown RBP16.82■□□□□ 0.28
Nup88-201ENSMUST00000035283 Plxnc1Q9QZC2 1574 aa16.82■□□□□ 0.28
Nup88-201ENSMUST00000035283 Eif2ak4Q9QZ05 1648 aa16.82■□□□□ 0.28
Nup88-201ENSMUST00000035283 Cfap65Q3V0B4 1847 aa16.81■□□□□ 0.28
Nup88-201ENSMUST00000035283 Rsph3aQ3UFY4 516 aa16.8■□□□□ 0.28
Nup88-201ENSMUST00000035283 Topbp1Q6ZQF0 1515 aa16.8■□□□□ 0.28
Nup88-201ENSMUST00000035283 Ccdc171E9Q1U1 1324 aa16.8■□□□□ 0.28
Nup88-201ENSMUST00000035283 Q3UPC7 1272 aa16.8■□□□□ 0.28
Nup88-201ENSMUST00000035283 Plekhm2Q80TQ5 1018 aa16.8■□□□□ 0.28
Nup88-201ENSMUST00000035283 Slc12a5Q91V14 1138 aa16.8■□□□□ 0.28
Nup88-201ENSMUST00000035283 Slc52a2Q9D8F3 450 aa16.8■□□□□ 0.28
Nup88-201ENSMUST00000035283 Pik3r4Q8VD65 1358 aa16.8■□□□□ 0.28
Nup88-201ENSMUST00000035283 Tbc1d9Q3UYK3 1264 aa16.79■□□□□ 0.28
Nup88-201ENSMUST00000035283 Atp1b4Q99ME6 356 aa16.79■□□□□ 0.28
Nup88-201ENSMUST00000035283 Rtn4Q99P72 1162 aaKnown RBP16.79■□□□□ 0.28
Nup88-201ENSMUST00000035283 Wdr63B2RY71 923 aa16.79■□□□□ 0.28
Nup88-201ENSMUST00000035283 Ythdc2B2RR83 1445 aaKnown RBP16.79■□□□□ 0.28
Nup88-201ENSMUST00000035283 Q4VA45 678 aa16.78■□□□□ 0.28
Nup88-201ENSMUST00000035283 PalmQ9Z0P4 383 aa16.78■□□□□ 0.28
Nup88-201ENSMUST00000035283 Vsig10D3YX43 558 aa16.77■□□□□ 0.28
Nup88-201ENSMUST00000035283 Ciz1Q8VEH2 845 aa16.77■□□□□ 0.28
Nup88-201ENSMUST00000035283 Swt1Q9DBQ9 907 aa16.77■□□□□ 0.28
Nup88-201ENSMUST00000035283 Nek4Q9Z1J2 792 aa16.77■□□□□ 0.28
Nup88-201ENSMUST00000035283 Nsd3Q6P2L6 1439 aa16.77■□□□□ 0.28
Nup88-201ENSMUST00000035283 Ift172Q6VH22 1749 aa16.77■□□□□ 0.28
Nup88-201ENSMUST00000035283 Gli2Q0VGT2 1544 aa16.77■□□□□ 0.27
Nup88-201ENSMUST00000035283 Uhrf1bp1B2KF50 1429 aa16.76■□□□□ 0.27
Nup88-201ENSMUST00000035283 Tecpr2Q3UH45 1423 aa16.76■□□□□ 0.27
Nup88-201ENSMUST00000035283 Naip7Q9JIB3 1402 aa16.76■□□□□ 0.27
Nup88-201ENSMUST00000035283 Aldh1l1Q8R0Y6 902 aa16.76■□□□□ 0.27
Nup88-201ENSMUST00000035283 NinlQ6ZQ12 1394 aa16.76■□□□□ 0.27
Nup88-201ENSMUST00000035283 MvpQ9EQK5 861 aa16.75■□□□□ 0.27
Nup88-201ENSMUST00000035283 Depdc5P61460 1591 aa16.75■□□□□ 0.27
Nup88-201ENSMUST00000035283 Ptch1Q61115 1434 aa16.75■□□□□ 0.27
Nup88-201ENSMUST00000035283 PaskQ8CEE6 1383 aa16.75■□□□□ 0.27
Nup88-201ENSMUST00000035283 Vamp4O70480 141 aa16.75■□□□□ 0.27
Nup88-201ENSMUST00000035283 Prdm2A2A7B5 1709 aaKnown RBP16.75■□□□□ 0.27
Nup88-201ENSMUST00000035283 Cdc42bpgQ80UW5 1551 aa16.74■□□□□ 0.27
Nup88-201ENSMUST00000035283 Cdc37l1Q9CZP7 335 aa16.74■□□□□ 0.27
Nup88-201ENSMUST00000035283 LifrP42703 1092 aa16.74■□□□□ 0.27
Nup88-201ENSMUST00000035283 Stk11ipQ3TAA7 1072 aa16.74■□□□□ 0.27
Nup88-201ENSMUST00000035283 Wwc1Q5SXA9 1104 aa16.73■□□□□ 0.27
Nup88-201ENSMUST00000035283 Shq1Q7TMX5 569 aa16.73■□□□□ 0.27
Nup88-201ENSMUST00000035283 CarsQ9ER72 831 aaKnown RBP16.73■□□□□ 0.27
Nup88-201ENSMUST00000035283 Ankrd44B2RXR6 993 aa16.73■□□□□ 0.27
Nup88-201ENSMUST00000035283 Trim44Q9QXA7 346 aa16.73■□□□□ 0.27
Nup88-201ENSMUST00000035283 Gsto1O09131 240 aa16.72■□□□□ 0.27
Nup88-201ENSMUST00000035283 Cetn4Q8K4K1 168 aa16.72■□□□□ 0.27
Nup88-201ENSMUST00000035283 Kdm4cQ8VCD7 1054 aa16.72■□□□□ 0.27
Nup88-201ENSMUST00000035283 OvosQ3UU35 1456 aa16.72■□□□□ 0.27
Nup88-201ENSMUST00000035283 Ncapd2Q8K2Z4 1392 aa16.71■□□□□ 0.27
Nup88-201ENSMUST00000035283 PtprtQ99M80 1454 aa16.71■□□□□ 0.27
Nup88-201ENSMUST00000035283 Bloc1s4Q8VED2 215 aa16.71■□□□□ 0.27
Nup88-201ENSMUST00000035283 Trim27Q62158 513 aa16.71■□□□□ 0.26
Nup88-201ENSMUST00000035283 Isy1Q69ZQ2 285 aaKnown RBP16.71■□□□□ 0.26
Nup88-201ENSMUST00000035283 Mroh1E0CZ22 1640 aa16.71■□□□□ 0.26
Nup88-201ENSMUST00000035283 Cep170bQ80U49 1574 aa16.7■□□□□ 0.26
Retrieved 100 of 22,080 RNA–protein pairs in 23.4 ms