RNA–Protein interactions for RNA: ENSMUST00000033088.7

Rnf40-201, Transcript of E3 ubiquitin-protein ligase BRE1B, mousemouse

TSL 5 BASIC

Gene Rnf40, Length 3,906 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40-201ENSMUST00000033088 Kif18aQ91WD7 886 aa13.12□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Pes1Q9EQ61 584 aaKnown RBP13.11□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Fmnl2A2APV2 1086 aa13.11□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Usp40Q8BWR4 1235 aa13.11□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Gripap1Q8VD04 806 aa13.11□□□□□ -0.31
Rnf40-201ENSMUST00000033088 4933402E13RikQ9D4D2 429 aa13.11□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Plekhh1Q80TI1 1356 aa13.11□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Znf518aB2RRF6 1478 aaKnown RBP13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Xrn1P97789 1719 aaKnown RBP13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Robo2Q7TPD3 1470 aa13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Clasp1Q80TV8 1535 aaKnown RBP13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 ShprhQ7TPQ3 1674 aa13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 A0A0U1RNP2 1173 aa13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Wdr78E9PYY5 807 aa13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Olfml1Q8BSH2 233 aa13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Sh3bp5Q9Z131 463 aa13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Col17a1Q07563 1470 aa13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 AglF8VPN4 1532 aa13.1□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Iffo2Q8R2V2 512 aa13.09□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Dot1lQ6XZL8 1540 aa13.09□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Atp10aO54827 1508 aa13.09□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Kdm5cP41230 1554 aa13.09□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Mad1l1Q9WTX8 717 aaKnown RBP13.09□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Ralbp1Q62172 648 aa13.08□□□□□ -0.31
Rnf40-201ENSMUST00000033088 Tpm2P58774 284 aa13.08□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Drc7Q6V3W6 876 aa13.08□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Ppip5k1A2ARP1 1436 aa13.08□□□□□ -0.32
Rnf40-201ENSMUST00000033088 MccE9PWI3 1003 aa13.07□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Usp48Q3V0C5 1052 aa13.07□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Depdc5P61460 1591 aa13.07□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Filip1lQ6P6L0 1131 aa13.06□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Eif4g2Q62448 906 aaKnown RBP13.06□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Dmrtc1Q9D9R7 182 aa13.06□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Plch2A2AP18 1501 aa13.06□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Mbd5B1AYB6 1498 aa13.06□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Zbtb22Q9Z0G7 638 aa13.06□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Gm973E9Q295 1059 aa13.05□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Arid4aF8VPQ2 1261 aaKnown RBP13.05□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Slc4a10Q5DTL9 1118 aa13.05□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Tmx1Q8VBT0 278 aa13.05□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Kif4P33174 1231 aa13.05□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Q3TQI7 289 aaKnown RBP13.05□□□□□ -0.32
Rnf40-201ENSMUST00000033088 HnrnpuQ8VEK3 800 aaKnown RBP13.05□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Sox12Q04890 314 aa13.04□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Ptch1Q61115 1434 aa13.04□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Rbm25B2RY56 838 aaKnown RBP13.04□□□□□ -0.32
Rnf40-201ENSMUST00000033088 RdxP26043 583 aaKnown RBP13.04□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Myo5cE9Q1F5 1742 aa13.04□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Mug2P28666 1451 aa13.04□□□□□ -0.32
Rnf40-201ENSMUST00000033088 PrxO55103 1391 aa13.04□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Cpsf1Q9EPU4 1441 aaKnown RBP13.04□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Polr3aB2RXC6 1390 aa13.03□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Pank2Q3U4S0 443 aa13.03□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Plekhg5Q66T02 1073 aa13.03□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Fam43aQ8BUP8 424 aa13.03□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Mink1Q9JM52 1308 aa13.03□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Tarbp1E9Q368 1579 aa13.03□□□□□ -0.32
Rnf40-201ENSMUST00000033088 SkilQ60665 675 aa13.03□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Edc4Q3UJB9 1406 aaKnown RBP13.03□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Maco1Q7TQE6 664 aaKnown RBP13.03□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Smarca5Q91ZW3 1051 aaKnown RBP13.03□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Gli2Q0VGT2 1544 aa13.02□□□□□ -0.32
Rnf40-201ENSMUST00000033088 Ncoa1P70365 1447 aa13.02□□□□□ -0.32
Rnf40-201ENSMUST00000033088 MecomP14404 1042 aa13.02□□□□□ -0.33
Rnf40-201ENSMUST00000033088 CalcaP70160 136 aa13.02□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Adam1bQ8R534 806 aa13.02□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Hmox1P14901 289 aa13.02□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Stk3Q9JI10 497 aa13.02□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Kiaa0556Q8C753 1610 aa13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 MpndQ3TV65 487 aa13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Ttc21bQ0HA38 1315 aa13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Terf2O35144 541 aa13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Mcm3P25206 812 aaKnown RBP13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Kank1E9Q238 1360 aa13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Ttc37F8VPK0 1563 aa13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Cdc42bpgQ80UW5 1551 aa13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 St18Q80TY4 1045 aa13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Sall3Q62255 1320 aa13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Topbp1Q6ZQF0 1515 aa13.01□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Sh3bgrQ9WUZ7 214 aa13□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Duxf3A0A0N4SV92 674 aa13□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Usp16Q99LG0 825 aa13□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Naip6Q9JIB6 1403 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Anapc15P60007 132 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Ric3Q8BPM6 367 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Synj2Q9D2G5 1434 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Dip2cE9PWR4 1557 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Znf326O88291 580 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Ppfia3P60469 1194 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Ppp1r3fQ9JIG4 799 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 RereQ80TZ9 1558 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Rasa1E9PYG6 1038 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Cavin1O54724 392 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Atl3Q91YH5 541 aa12.99□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Uggt2E9Q4X2 1504 aa12.98□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Iqgap1Q9JKF1 1657 aaKnown RBP12.98□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Nsfl1cQ9CZ44 370 aaKnown RBP12.98□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Rlbp1Q9Z275 317 aa12.98□□□□□ -0.33
Rnf40-201ENSMUST00000033088 RalgapbQ8BQZ4 1484 aa12.98□□□□□ -0.33
Rnf40-201ENSMUST00000033088 Fndc1E9Q043 1732 aa12.98□□□□□ -0.33
Retrieved 100 of 22,080 RNA–protein pairs in 35.8 ms