RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 C12orf29Q8N999 325 aa14.06□□□□□ -0.16
VPS33A-208ENST00000543633 ZC3H15Q8WU90 426 aaKnown RBP14.06□□□□□ -0.16
VPS33A-208ENST00000543633 MMP19Q99542 508 aa14.06□□□□□ -0.16
VPS33A-208ENST00000543633 DDX50Q9BQ39 737 aaKnown RBP14.06□□□□□ -0.16
VPS33A-208ENST00000543633 LRRC40Q9H9A6 602 aa14.06□□□□□ -0.16
VPS33A-208ENST00000543633 SNX15Q9NRS6 342 aa14.06□□□□□ -0.16
VPS33A-208ENST00000543633 ERAP1Q9NZ08 941 aa14.06□□□□□ -0.16
VPS33A-208ENST00000543633 PDE5AO76074 875 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 ARF4P18085 180 aaPredicted RBP14.05□□□□□ -0.16
VPS33A-208ENST00000543633 DNAJB1P25685 340 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 SERPINB6P35237 376 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 HERC3Q15034 1050 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 PDK3Q15120 406 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 TRIP10Q15642 601 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 DCAF4L1Q3SXM0 396 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 UGT2A3Q6UWM9 527 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 SULF1Q8IWU6 871 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 SCUBE3Q8IX30 993 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 UNC5BQ8IZJ1 945 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 PQLC1Q8N2U9 271 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 NAT14Q8WUY8 206 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 KIF12Q96FN5 646 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 HSFY1Q96LI6 401 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 SYBUQ9NX95 663 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.05□□□□□ -0.16
VPS33A-208ENST00000543633 FZD10Q9ULW2 581 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 DTNAQ9Y4J8 743 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 PSAT1Q9Y617 370 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 ZNF236Q9UL36 1845 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 PDCD11Q14690 1871 aaKnown RBP14.05□□□□□ -0.16
VPS33A-208ENST00000543633 MFSD11O43934 449 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 HSPA4LO95757 839 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 NCF2P19878 526 aaPredicted RBP14.05□□□□□ -0.16
VPS33A-208ENST00000543633 ARRB2P32121 409 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 HSPA13P48723 471 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 SESN2P58004 480 aaPredicted RBP14.05□□□□□ -0.16
VPS33A-208ENST00000543633 SNAPC2Q13487 334 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 PAFAH1B3Q15102 231 aaKnown RBP14.05□□□□□ -0.16
VPS33A-208ENST00000543633 LPCAT4Q643R3 524 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 ACOT1Q86TX2 421 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 RSPH3Q86UC2 560 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 ALDH16A1Q8IZ83 802 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 ANKRD52Q8NB46 1076 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 RAB26Q9ULW5 256 aa14.05□□□□□ -0.16
VPS33A-208ENST00000543633 A0A087WZ62 844 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 ERI2A8K979 691 aaKnown RBP14.04□□□□□ -0.16
VPS33A-208ENST00000543633 SLCO1B7G3V0H7 640 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 DCXO43602 365 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 TIMM44O43615 452 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 TRIM13O60858 407 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 TFE3P19532 575 aaPredicted RBP14.04□□□□□ -0.16
VPS33A-208ENST00000543633 RGS2P41220 211 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 RARS2Q5T160 578 aaKnown RBP14.04□□□□□ -0.16
VPS33A-208ENST00000543633 TMEM130Q8N3G9 435 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 PHTF2Q8N3S3 785 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 DCLK2Q8N568 766 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 CCDC185Q8N715 623 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 SHKBP1Q8TBC3 707 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 DLG3Q92796 817 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 P2RY11Q96G91 374 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 ZNF668Q96K58 619 aaPredicted RBP14.04□□□□□ -0.16
VPS33A-208ENST00000543633 ZFRQ96KR1 1074 aaKnown RBP14.04□□□□□ -0.16
VPS33A-208ENST00000543633 MRPL45Q9BRJ2 306 aaKnown RBP14.04□□□□□ -0.16
VPS33A-208ENST00000543633 FDXACB1Q9BRP7 624 aaPredicted RBP14.04□□□□□ -0.16
VPS33A-208ENST00000543633 COG4Q9H9E3 785 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 CYP4F11Q9HBI6 524 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 ANKRD6Q9Y2G4 727 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 OTOFQ9HC10 1997 aa14.04□□□□□ -0.16
VPS33A-208ENST00000543633 C15orf38-AP3S2A0A0A6YYH1 394 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 IRF6O14896 467 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 ZBTB14O43829 449 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 TSPAN1O60635 241 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 DAB1O75553 588 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 GOT1P17174 413 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 PSMB4P28070 264 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 MATKP42679 507 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 ALDH1A3P47895 512 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 DLG1Q12959 904 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 MAP7Q14244 749 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 TREML2Q5T2D2 321 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 ATG14Q6ZNE5 492 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 EEPD1Q7L9B9 569 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 ARPINQ7Z6K5 226 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 HPS6Q86YV9 775 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 CPSF7Q8N684 471 aaKnown RBP14.03□□□□□ -0.16
VPS33A-208ENST00000543633 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.03□□□□□ -0.16
VPS33A-208ENST00000543633 RP9Q8TA86 221 aaKnown RBP14.03□□□□□ -0.16
VPS33A-208ENST00000543633 CCDC124Q96CT7 223 aaKnown RBP14.03□□□□□ -0.16
VPS33A-208ENST00000543633 PGBD4Q96DM1 585 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 CPB2Q96IY4 423 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 TCF7L2Q9NQB0 619 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 FAM49BQ9NUQ9 324 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 NSMCE4AQ9NXX6 385 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 PTTG2Q9NZH5 202 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 SLC17A6Q9P2U8 582 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 RAP2CQ9Y3L5 183 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 RPS6KL1Q9Y6S9 549 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 DNAJC25-GNG10A0A024R161 153 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 RGSL1A5PLK6 1076 aa14.03□□□□□ -0.16
VPS33A-208ENST00000543633 G3V2L1 256 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms