RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 AP3M2P53677 418 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 ARMCX2Q7L311 632 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 NME8Q8N427 588 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 PPP1R14CQ8TAE6 165 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 USP33Q8TEY7 942 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 FBXO41Q8TF61 875 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 TRIM8Q9BZR9 551 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 ZNF180Q9UJW8 692 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 PLXNA1Q9UIW2 1896 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 SPECC1L-ADORA2AF8WAN1 911 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 MAGEA6P43360 314 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 MRPS35P82673 323 aaKnown RBP10.96□□□□□ -0.65
USP28-201ENST00000003302 SEMA5AQ13591 1074 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 TSNAXIP1Q2TAA8 658 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 CFAP157Q5JU67 520 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 EDEM1Q92611 657 aa10.96□□□□□ -0.65
USP28-201ENST00000003302 ZBTB24O43167 697 aaPredicted RBP10.96□□□□□ -0.66
USP28-201ENST00000003302 GCATO75600 419 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 RECQL4O94761 1208 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 MT-CYBP00156 380 aaPredicted RBP10.96□□□□□ -0.66
USP28-201ENST00000003302 PAPOLAP51003 745 aaKnown RBP10.96□□□□□ -0.66
USP28-201ENST00000003302 ASPHQ12797 758 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 CUL3Q13618 768 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 SH3D19Q5HYK7 790 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 DENND6AQ8IWF6 608 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 QKIQ96PU8 341 aaKnown RBP eCLIP10.96□□□□□ -0.66
USP28-201ENST00000003302 BRD8Q9H0E9 1235 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 NDFIP2Q9NV92 336 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 THAP1Q9NVV9 213 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 NUDT5Q9UKK9 219 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 ZCWPW2A0A1B0GU75 182 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 CCL22O00626 93 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 AIM2O14862 343 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 PPP1R12AO14974 1030 aaPredicted RBP10.96□□□□□ -0.66
USP28-201ENST00000003302 PAN2Q504Q3 1202 aaKnown RBP10.96□□□□□ -0.66
USP28-201ENST00000003302 BOLA3Q53S33 107 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 IRGCQ6NXR0 463 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 OTOP3Q7RTS5 596 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 PLPPR4Q7Z2D5 763 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 LMNTD2Q8IXW0 634 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 ZNF669Q96BR6 464 aaPredicted RBP10.96□□□□□ -0.66
USP28-201ENST00000003302 ZNF670Q9BS34 389 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 MLPHQ9BV36 600 aaPredicted RBP10.96□□□□□ -0.66
USP28-201ENST00000003302 SOX13Q9UN79 622 aa10.96□□□□□ -0.66
USP28-201ENST00000003302 YJEFN3A6XGL0 299 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 E7ENQ6 273 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 F8W810 466 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 MAGEC1O60732 1142 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 RAG1P15918 1043 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 XRCC1P18887 633 aaPredicted RBP10.95□□□□□ -0.66
USP28-201ENST00000003302 AOC1P19801 751 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 NMBRP28336 390 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 TYK2P29597 1187 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 PDPK2PQ6A1A2 396 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 NUF2Q9BZD4 464 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 UBE2OQ9C0C9 1292 aaKnown RBP10.95□□□□□ -0.66
USP28-201ENST00000003302 WWP1Q9H0M0 922 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 S100A14Q9HCY8 104 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 C9JVG2 144 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 MDM4O15151 490 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 MAP3K7O43318 606 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 KRT38O76015 456 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 TSPAN8P19075 237 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 TLR1Q15399 786 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 ZNF789Q5FWF6 425 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 FAM47CQ5HY64 1035 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 PGM2L1Q6PCE3 622 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 CLIC5Q9NZA1 410 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 FIS1Q9Y3D6 152 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 TGFB3P10600 412 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 RAB27AP51159 221 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 THOP1P52888 689 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 MRPS22P82650 360 aaKnown RBP10.95□□□□□ -0.66
USP28-201ENST00000003302 BIRC2Q13490 618 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 VRTNQ9H8Y1 702 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 SLC2A6Q9UGQ3 507 aa10.95□□□□□ -0.66
USP28-201ENST00000003302 LIN7AO14910 233 aaPredicted RBP10.94□□□□□ -0.66
USP28-201ENST00000003302 ALDH1A2O94788 518 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 LUC7L3O95232 432 aaKnown RBP10.94□□□□□ -0.66
USP28-201ENST00000003302 TGM2P21980 687 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 CNPY1Q3B7I2 92 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 PID1Q7Z2X4 250 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 STRA8Q7Z7C7 330 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 CENPIQ92674 756 aaPredicted RBP10.94□□□□□ -0.66
USP28-201ENST00000003302 NDE1Q9NXR1 346 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 ZDHHC2Q9UIJ5 367 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 A0A0A0MRY4 1105 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 FESP07332 822 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 PTPN1P18031 435 aaKnown RBP10.94□□□□□ -0.66
USP28-201ENST00000003302 KCNA5P22460 613 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 INHBCP55103 352 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 CTBP1Q13363 440 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 TRIP10Q15642 601 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 SLC30A9Q6PML9 568 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 CEP128Q6ZU80 1094 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 METTL25Q8N6Q8 603 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 ZSCAN18Q8TBC5 510 aaPredicted RBP10.94□□□□□ -0.66
USP28-201ENST00000003302 RNF139Q8WU17 664 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 SPATA13Q96N96 652 aa10.94□□□□□ -0.66
USP28-201ENST00000003302 GATA5Q9BWX5 397 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms