RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 C11orf63Q6NUN7 778 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 TXNDC11Q6PKC3 985 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 TPRG1Q6ZUI0 275 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 ERMP1Q7Z2K6 904 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 DAAM2Q86T65 1068 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 CIR1Q86X95 450 aaPredicted RBP8.84□□□□□ -0.99
NUP88-211ENST00000575976 PSTKQ8IV42 348 aaKnown RBP8.84□□□□□ -0.99
NUP88-211ENST00000575976 REXO1L1PQ8IX06 675 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 ETFBKMTQ8IXQ9 262 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 RNF10Q8N5U6 811 aaKnown RBP8.84□□□□□ -0.99
NUP88-211ENST00000575976 HJURPQ8NCD3 748 aaPredicted RBP8.84□□□□□ -0.99
NUP88-211ENST00000575976 TEKT4Q8WW24 435 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 RPRD1AQ96P16 312 aaPredicted RBP8.84□□□□□ -0.99
NUP88-211ENST00000575976 IRX2Q9BZI1 471 aaPredicted RBP8.84□□□□□ -0.99
NUP88-211ENST00000575976 ARHGEF3Q9NR81 526 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 TRMT1Q9NXH9 659 aaKnown RBP8.84□□□□□ -0.99
NUP88-211ENST00000575976 OR12D3Q9UGF7 316 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 FBXL21Q9UKT6 434 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 CLEC4EQ9ULY5 219 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 CAPN6Q9Y6Q1 641 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 PIAS3Q9Y6X2 628 aa8.84□□□□□ -0.99
NUP88-211ENST00000575976 SPTBN4Q9H254 2564 aa8.83□□□□□ -1
NUP88-211ENST00000575976 CACNA1GO43497 2377 aa8.83□□□□□ -1
NUP88-211ENST00000575976 TYW5A2RUC4 315 aaKnown RBP8.83□□□□□ -1
NUP88-211ENST00000575976 USP27XA6NNY8 438 aa8.83□□□□□ -1
NUP88-211ENST00000575976 TRIM24O15164 1050 aa8.83□□□□□ -1
NUP88-211ENST00000575976 ZSCAN12O43309 604 aa8.83□□□□□ -1
NUP88-211ENST00000575976 CREB3O43889 395 aa8.83□□□□□ -1
NUP88-211ENST00000575976 CACNG3O60359 315 aa8.83□□□□□ -1
NUP88-211ENST00000575976 TULP3O75386 442 aa8.83□□□□□ -1
NUP88-211ENST00000575976 CNTN5O94779 1100 aa8.83□□□□□ -1
NUP88-211ENST00000575976 CISD3P0C7P0 127 aa8.83□□□□□ -1
NUP88-211ENST00000575976 GLULP15104 373 aa8.83□□□□□ -1
NUP88-211ENST00000575976 CD72P21854 359 aa8.83□□□□□ -1
NUP88-211ENST00000575976 GALK1P51570 392 aa8.83□□□□□ -1
NUP88-211ENST00000575976 ARSEP51690 589 aa8.83□□□□□ -1
NUP88-211ENST00000575976 AMPD2Q01433 879 aa8.83□□□□□ -1
NUP88-211ENST00000575976 PRKCQQ04759 706 aa8.83□□□□□ -1
NUP88-211ENST00000575976 SEMA3BQ13214 749 aa8.83□□□□□ -1
NUP88-211ENST00000575976 DPYSL2Q16555 572 aa8.83□□□□□ -1
NUP88-211ENST00000575976 RABGAP1LQ5R372 815 aa8.83□□□□□ -1
NUP88-211ENST00000575976 ASTLQ6HA08 431 aaPredicted RBP8.83□□□□□ -1
NUP88-211ENST00000575976 RWDD4Q6NW29 188 aaKnown RBP8.83□□□□□ -1
NUP88-211ENST00000575976 LRRC31Q6UY01 552 aa8.83□□□□□ -1
NUP88-211ENST00000575976 BMP8AQ7Z5Y6 402 aa8.83□□□□□ -1
NUP88-211ENST00000575976 RALGPS2Q86X27 583 aaPredicted RBP8.83□□□□□ -1
NUP88-211ENST00000575976 SUGP1Q8IWZ8 645 aaKnown RBP8.83□□□□□ -1
NUP88-211ENST00000575976 RHOT1Q8IXI2 618 aa8.83□□□□□ -1
NUP88-211ENST00000575976 CCAR2Q8N163 923 aaKnown RBP8.83□□□□□ -1
NUP88-211ENST00000575976 SIX5Q8N196 739 aa8.83□□□□□ -1
NUP88-211ENST00000575976 CARNMT1Q8N4J0 409 aa8.83□□□□□ -1
NUP88-211ENST00000575976 LRRC57Q8N9N7 239 aa8.83□□□□□ -1
NUP88-211ENST00000575976 KIAA1524Q8TCG1 905 aa8.83□□□□□ -1
NUP88-211ENST00000575976 WFDC5Q8TCV5 224 aa8.83□□□□□ -1
NUP88-211ENST00000575976 FAM3CQ92520 227 aa8.83□□□□□ -1
NUP88-211ENST00000575976 EDAQ92838 391 aa8.83□□□□□ -1
NUP88-211ENST00000575976 CD101Q93033 1021 aa8.83□□□□□ -1
NUP88-211ENST00000575976 TBC1D31Q96DN5 1066 aa8.83□□□□□ -1
NUP88-211ENST00000575976 XPO6Q96QU8 1125 aaKnown RBP8.83□□□□□ -1
NUP88-211ENST00000575976 EPAS1Q99814 870 aa8.83□□□□□ -1
NUP88-211ENST00000575976 PCDH18Q9HCL0 1135 aa8.83□□□□□ -1
NUP88-211ENST00000575976 FBRSL1Q9HCM7 1045 aaKnown RBP8.83□□□□□ -1
NUP88-211ENST00000575976 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.83□□□□□ -1
NUP88-211ENST00000575976 KLHL11Q9NVR0 708 aa8.83□□□□□ -1
NUP88-211ENST00000575976 MPP6Q9NZW5 540 aa8.83□□□□□ -1
NUP88-211ENST00000575976 PPARGC1AQ9UBK2 798 aaKnown RBP8.83□□□□□ -1
NUP88-211ENST00000575976 FBXO10Q9UK96 956 aa8.83□□□□□ -1
NUP88-211ENST00000575976 NEU3Q9UQ49 428 aa8.83□□□□□ -1
NUP88-211ENST00000575976 TICRRQ7Z2Z1 1910 aa8.83□□□□□ -1
NUP88-211ENST00000575976 COL4A2P08572 1712 aa8.83□□□□□ -1
NUP88-211ENST00000575976 COL4A3Q01955 1670 aa8.82□□□□□ -1
NUP88-211ENST00000575976 A0A1B0GVM2 712 aa8.82□□□□□ -1
NUP88-211ENST00000575976 TCAF2A6NFQ2 919 aa8.82□□□□□ -1
NUP88-211ENST00000575976 H0Y626 953 aa8.82□□□□□ -1
NUP88-211ENST00000575976 EEF2KO00418 725 aaKnown RBP8.82□□□□□ -1
NUP88-211ENST00000575976 MAN2B1O00754 1011 aa8.82□□□□□ -1
NUP88-211ENST00000575976 LUC7L3O95232 432 aaKnown RBP8.82□□□□□ -1
NUP88-211ENST00000575976 FTCDO95954 541 aa8.82□□□□□ -1
NUP88-211ENST00000575976 KRT7P08729 469 aa8.82□□□□□ -1
NUP88-211ENST00000575976 CD48P09326 243 aa8.82□□□□□ -1
NUP88-211ENST00000575976 GOT1P17174 413 aa8.82□□□□□ -1
NUP88-211ENST00000575976 IL4RP24394 825 aa8.82□□□□□ -1
NUP88-211ENST00000575976 CTNNA2P26232 953 aa8.82□□□□□ -1
NUP88-211ENST00000575976 EPHB2P29323 1055 aa8.82□□□□□ -1
NUP88-211ENST00000575976 HOXC13P31276 330 aa8.82□□□□□ -1
NUP88-211ENST00000575976 EIF2DP41214 584 aaKnown RBP8.82□□□□□ -1
NUP88-211ENST00000575976 MARCKSL1P49006 195 aa8.82□□□□□ -1
NUP88-211ENST00000575976 DGKGP49619 791 aa8.82□□□□□ -1
NUP88-211ENST00000575976 CDH4P55283 916 aa8.82□□□□□ -1
NUP88-211ENST00000575976 CDH6P55285 790 aa8.82□□□□□ -1
NUP88-211ENST00000575976 STARD6P59095 220 aa8.82□□□□□ -1
NUP88-211ENST00000575976 TPI1P60174 286 aa8.82□□□□□ -1
NUP88-211ENST00000575976 SIGLEC14Q08ET2 396 aa8.82□□□□□ -1
NUP88-211ENST00000575976 MESP2Q0VG99 397 aa8.82□□□□□ -1
NUP88-211ENST00000575976 MMRN1Q13201 1228 aa8.82□□□□□ -1
NUP88-211ENST00000575976 KRT81Q14533 505 aa8.82□□□□□ -1
NUP88-211ENST00000575976 PON2Q15165 354 aa8.82□□□□□ -1
NUP88-211ENST00000575976 PPP6R3Q5H9R7 873 aaPredicted RBP8.82□□□□□ -1
NUP88-211ENST00000575976 FSCBQ5H9T9 825 aa8.82□□□□□ -1
NUP88-211ENST00000575976 ZFYVE27Q5T4F4 411 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms