RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Zfp780bE9Q2S6 806 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 AvilO88398 819 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Il12bP43432 335 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Cyp2c66Q5GLZ0 490 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Fbxw2Q60584 422 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 R3hdm2Q80TM6 1044 aaKnown RBP12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Atg4cQ811C2 458 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Stk32aQ8BGW6 398 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Hist1h2aaQ8CGP4 129 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mboat7Q8CHK3 473 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Ap3m1Q9JKC8 418 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 S100zB9EJL3 99 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Kcnt2D3Z649 1135 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Lilra5D3Z7A9 295 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Adam7O35227 789 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Fkbp8O35465 402 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Itgb3O54890 787 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 EpoP07321 192 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Scn1bP97952 218 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Atg9aQ68FE2 551 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mtmr6Q8VE11 617 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mcm8Q9CWV1 833 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Tmed11Q9D2R4 215 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 AcadsbQ9DBL1 432 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Ak1Q9R0Y5 194 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Myh2G3UW82 1942 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Myh1Q5SX40 1942 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mup10A2BIN1 180 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mup14A2CEK7 180 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mup19A9C497 187 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mup15A9R9W0 180 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mup17B5X0G2 180 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mup8E9PVW0 235 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mup7E9QA79 235 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Srpk1O70551 648 aaKnown RBP12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mup6P02762 180 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mup1P11588 180 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mup2P11589 180 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Tcea3P23881 347 aaKnown RBP12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Shmt1P50431 478 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Defa8P50706 81 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Abi3Q8BYZ1 367 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 IlkapQ8R0F6 392 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Slc25a38Q91XD8 326 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Pkp2Q9CQ73 795 aaKnown RBP12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Katna1Q9WV86 491 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Pld1Q9Z280 1074 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Kif1aP33173 1695 aa12.17□□□□□ -0.46
Trim56-201ENSMUST00000054384 Kansl3A2RSY1 903 aaKnown RBP12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Zbtb11G5E8B9 1050 aaKnown RBP12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Nptx2O70340 429 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Grm6Q5NCH9 871 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Nup62Q63850 526 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Arhgap12Q8C0D4 838 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Acad9Q8JZN5 625 aaKnown RBP12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 BsndQ8VIM4 307 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Ggt7Q99JP7 662 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Msh4Q99MT2 958 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Fam227bQ9D518 532 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Tmem2Q5FWI3 1383 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Gm17333C6EQI3 125 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Gm3278L7N2D2 218 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Slc27a2O35488 620 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Prl2c3P04768 224 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Cdh6P97326 790 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Slc38a5Q3U1J0 479 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Rnf145Q5SWK7 663 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mxd4Q60948 209 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Crls1Q80ZM8 303 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Gpr1Q8K087 353 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Iqsec1Q8R0S2 961 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 MyocdQ8VIM5 935 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Serpinb1aQ9D154 379 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Q9D4A5 307 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Abca8aQ8K442 1620 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Umodl1Q5DID3 1319 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Fkbp1aP26883 108 aaKnown RBP12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Serpina3cP29621 417 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Ephb2P54763 986 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Tll1Q62381 1013 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 NrcamQ810U4 1256 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Epb41l5Q8BGS1 731 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Ptpn7Q8BUM3 359 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 SowahdQ8BY98 327 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Znf24Q91VN1 368 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Oxct1Q9D0K2 520 aaKnown RBP12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Ap3s1Q9DCR2 193 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 HnrnpdlQ9Z130 301 aaKnown RBP12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Gm20695H3BLK7 282 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Gm2244L7N2A3 218 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Tal1P22091 329 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Arf5P84084 180 aaKnown RBP12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Clec12aQ504P2 267 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Kpna1Q60960 538 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 ChpfQ6IQX7 774 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mindy1Q76LS9 468 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 OgtQ8CGY8 1046 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Mgrn1Q9D074 532 aa12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Vps35Q9EQH3 796 aaKnown RBP12.16□□□□□ -0.46
Trim56-201ENSMUST00000054384 Zfp472B0V2W5 534 aa12.16□□□□□ -0.46
Retrieved 100 of 22,080 RNA–protein pairs in 24 ms