RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 LRRC4Q9HBW1 653 aa7.8□□□□□ -1.16
NUP88-205ENST00000572809 SPHK2Q9NRA0 654 aa7.8□□□□□ -1.16
NUP88-205ENST00000572809 POLR3BQ9NW08 1133 aaPredicted RBP7.8□□□□□ -1.16
NUP88-205ENST00000572809 KIAA1522Q9P206 1035 aaPredicted RBP7.8□□□□□ -1.16
NUP88-205ENST00000572809 LSM7Q9UK45 103 aaKnown RBP7.8□□□□□ -1.16
NUP88-205ENST00000572809 SMG5Q9UPR3 1016 aaKnown RBP7.8□□□□□ -1.16
NUP88-205ENST00000572809 FNDC3AQ9Y2H6 1198 aaKnown RBP7.8□□□□□ -1.16
NUP88-205ENST00000572809 HELZP42694 1942 aaKnown RBP7.8□□□□□ -1.16
NUP88-205ENST00000572809 TBC1D3BA6NDS4 549 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.79□□□□□ -1.16
NUP88-205ENST00000572809 TULP2O00295 520 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 MDM4O15151 490 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 GREM1O60565 184 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 KAT7O95251 611 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 ZBED1O96006 694 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 THBS1P07996 1170 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 AMPD1P23109 780 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 GRIA2P42262 883 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 TNFRSF4P43489 277 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 PXNP49023 591 aaPredicted RBP7.79□□□□□ -1.16
NUP88-205ENST00000572809 BCAT1P54687 386 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 YWHAGP61981 247 aaKnown RBP eCLIP7.79□□□□□ -1.16
NUP88-205ENST00000572809 MRPS21P82921 87 aaKnown RBP7.79□□□□□ -1.16
NUP88-205ENST00000572809 GCNT1Q02742 428 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 BST2Q10589 180 aaKnown RBP7.79□□□□□ -1.16
NUP88-205ENST00000572809 EFEMP1Q12805 493 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 SRSF5Q13243 272 aaKnown RBP7.79□□□□□ -1.16
NUP88-205ENST00000572809 DMC1Q14565 340 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 STILQ15468 1287 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 LPAL2Q16609 132 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 TPD52L1Q16890 204 aaPredicted RBP7.79□□□□□ -1.16
NUP88-205ENST00000572809 PREPLQ4J6C6 727 aaPredicted RBP7.79□□□□□ -1.16
NUP88-205ENST00000572809 EMC10Q5UCC4 262 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 LCLAT1Q6UWP7 414 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 TPGS1Q6ZTW0 290 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 CEP68Q76N32 757 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 CD163Q86VB7 1156 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 C12orf40Q86WS4 652 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 MIB1Q86YT6 1006 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 ARHGEF19Q8IW93 802 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 USP33Q8TEY7 942 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 KCTD13Q8WZ19 329 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 TFAP2BQ92481 460 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 KAT5Q92993 513 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 MED15Q96RN5 788 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 ULBP1Q9BZM6 244 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 CLSTN2Q9H4D0 955 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 UBE2TQ9NPD8 197 aaPredicted RBP7.79□□□□□ -1.16
NUP88-205ENST00000572809 ARHGEF4Q9NR80 690 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 WDR35Q9P2L0 1181 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 DEC1Q9P2X7 70 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 GDF2Q9UK05 429 aaPredicted RBP7.79□□□□□ -1.16
NUP88-205ENST00000572809 GMEB2Q9UKD1 530 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 ZNF510Q9Y2H8 683 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 RIF1Q5UIP0 2472 aaKnown RBP7.79□□□□□ -1.16
NUP88-205ENST00000572809 ATG2BQ96BY7 2078 aa7.79□□□□□ -1.16
NUP88-205ENST00000572809 USP34Q70CQ2 3546 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 MYO15AQ9UKN7 3530 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 ANTXRLA6NF34 631 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 O00370 1275 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 HOXC11O43248 304 aaPredicted RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 TULP3O75386 442 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 STC2O76061 302 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 RETP07949 1114 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 HMBSP08397 361 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 SETSIPP0DME0 302 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 LCP1P13796 627 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 HOXB4P17483 251 aaPredicted RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 CHKAP35790 457 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 ID4P47928 161 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 TAGLNQ01995 201 aaKnown RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 MESP2Q0VG99 397 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 BSPRYQ5W0U4 402 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 LAIR1Q6GTX8 287 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 CLEC17AQ6ZS10 378 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 RSRC2Q7L4I2 434 aaKnown RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 CACNA2D4Q7Z3S7 1137 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 IRF2BP1Q8IU81 584 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 SIX6OS1Q8N1H7 587 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 CCDC33Q8N5R6 958 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 RBBP8NLQ8NC74 664 aaPredicted RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 RNF139Q8WU17 664 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 SLC35F5Q8WV83 523 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 NDRG1Q92597 394 aaKnown RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 CNOT6LQ96LI5 555 aaKnown RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 KREMEN1Q96MU8 473 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 IPO9Q96P70 1041 aaKnown RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 XPO6Q96QU8 1125 aaKnown RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 HHIPQ96QV1 700 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 BBS2Q9BXC9 721 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 DCLK3Q9C098 648 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 INTS2Q9H0H0 1204 aaKnown RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 ABCC13Q9NSE7 274 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 OLA1Q9NTK5 396 aaKnown RBP7.78□□□□□ -1.16
NUP88-205ENST00000572809 EBF1Q9UH73 591 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 RASAL2Q9UJF2 1139 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 STRIP2Q9ULQ0 834 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 DMDP11532 3685 aa7.78□□□□□ -1.16
NUP88-205ENST00000572809 FAM186AA6NE01 2351 aa7.77□□□□□ -1.17
NUP88-205ENST00000572809 SLC12A8A0AV02 714 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms