RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 NT5DC1Q5TFE4 455 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 MRM1Q6IN84 353 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 LETMD1Q6P1Q0 360 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 VHLLQ6RSH7 139 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 DHRS13Q6UX07 377 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 BEND4Q6ZU67 534 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 METTL23Q86XA0 190 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 MARCH9Q86YJ5 346 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 SPACA3Q8IXA5 215 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 DCP1BQ8IZD4 617 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 THEM5Q8N1Q8 247 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 TTC9BQ8N6N2 239 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 ZNF513Q8N8E2 541 aaPredicted RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 CADM4Q8NFZ8 388 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 RIN3Q8TB24 985 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 SH3RF2Q8TEC5 729 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 PIGOQ8TEQ8 1089 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 DNASE2BQ8WZ79 361 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 C18orf25Q96B23 403 aaPredicted RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 TRMT2BQ96GJ1 504 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 SLC6A18Q96N87 628 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 MTMR9Q96QG7 549 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 TSPAN18Q96SJ8 248 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 LGMNQ99538 433 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 TCHPQ9BT92 498 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 MRPL4Q9BYD3 311 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 KRTAP4-2Q9BYR5 136 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 ZCWPW1Q9H0M4 648 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 CDT1Q9H211 546 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 PLEKHA5Q9HAU0 1116 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 TRPC7Q9HCX4 862 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 PTPRHQ9HD43 1115 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 GPRC5CQ9NQ84 441 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 ARHGEF4Q9NR80 690 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 ANKMY1Q9P2S6 941 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 SUCOQ9UBS9 1254 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 FTSJ1Q9UET6 329 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 UBQLN1Q9UMX0 589 aaKnown RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 PCDHB10Q9UN67 800 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 PCDHA12Q9UN75 941 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 ARHGAP26Q9UNA1 814 aa4.38□□□□□ -1.71
SNHG1-220ENST00000544550 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 TIMM13Q9Y5L4 95 aaPredicted RBP4.38□□□□□ -1.71
SNHG1-220ENST00000544550 NUP210Q8TEM1 1887 aaPredicted RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 MAST4O15021 2626 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 DMXL2Q8TDJ6 3036 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 TBC1D3BA6NDS4 549 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 PYCARD-AS1I3L0S3 204 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 PCDHGA12O60330 932 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 DFNA5O60443 496 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 CLEC3AO75596 197 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 RFPL3O75679 317 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 NOL4O94818 638 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 DEXIO95424 95 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 CYP17A1P05093 508 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 NCAM1P13591 858 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 HMGA1P17096 107 aaKnown RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 XBP1P17861 261 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 CYP11B2P19099 503 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 CD6P30203 668 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 NMT1P30419 496 aaKnown RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 OXTRP30559 389 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 NTSR1P30989 418 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 AFF3P51826 1226 aaKnown RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 RPL10AP62906 217 aaKnown RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 SSRP1Q08945 709 aaKnown RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 CCDC173Q0VFZ6 552 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 LY6DQ14210 128 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 NFKBIBQ15653 356 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 NFE2Q16621 373 aaPredicted RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 KYAT1Q16773 422 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 BBS9Q3SYG4 887 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 CCDC157Q569K6 752 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 BTBD8Q5XKL5 378 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 PAOXQ6QHF9 649 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 MPZL3Q6UWV2 235 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 ATG14Q6ZNE5 492 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 TMEM150AQ86TG1 271 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 DDX42Q86XP3 938 aaKnown RBP eCLIP4.37□□□□□ -1.717e-6■■■□□ 16.5
SNHG1-220ENST00000544550 LSMEM2Q8N112 164 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 ZCCHC9Q8N567 271 aaKnown RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 OR10T2Q8NGX3 314 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 SNRNP27Q8WVK2 155 aaKnown RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 HAS1Q92839 578 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 KIFAP3Q92845 792 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 ZNF669Q96BR6 464 aaPredicted RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 ZNF578Q96N58 590 aaPredicted RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 MIPEPQ99797 713 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 ACO2Q99798 780 aaKnown RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 DPH1Q9BZG8 443 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 SEMA4CQ9C0C4 833 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 LSG1Q9H089 658 aaKnown RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 KCNF1Q9H3M0 494 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 RPF1Q9H9Y2 349 aaKnown RBP4.37□□□□□ -1.71
SNHG1-220ENST00000544550 IL21RQ9HBE5 538 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 TUFT1Q9NNX1 390 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 EHD2Q9NZN4 543 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 TBC1D14Q9P2M4 693 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 TUBGCP4Q9UGJ1 667 aa4.37□□□□□ -1.71
SNHG1-220ENST00000544550 KCNG1Q9UIX4 513 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms