RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 FAM217AQ8IXS0 508 aa17.24■□□□□ 0.35
VIM-208ENST00000497849 ZC3H3Q8IXZ2 948 aaKnown RBP17.24■□□□□ 0.35
VIM-208ENST00000497849 DCBLD1Q8N8Z6 715 aa17.24■□□□□ 0.35
VIM-208ENST00000497849 LGMNQ99538 433 aa17.24■□□□□ 0.35
VIM-208ENST00000497849 HNRNPABQ99729 332 aaKnown RBP17.24■□□□□ 0.35
VIM-208ENST00000497849 FBRSQ9HAH7 460 aa17.24■□□□□ 0.35
VIM-208ENST00000497849 PNPLA8Q9NP80 782 aa17.24■□□□□ 0.35
VIM-208ENST00000497849 CLIC5Q9NZA1 410 aa17.24■□□□□ 0.35
VIM-208ENST00000497849 A0A1W2PR77 199 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 C10orf142B7Z368 130 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 EIF3DO15371 548 aaKnown RBP eCLIP17.23■□□□□ 0.35
VIM-208ENST00000497849 RALAP11233 206 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 C6P13671 934 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 HOXD9P28356 352 aaPredicted RBP17.23■□□□□ 0.35
VIM-208ENST00000497849 TXLNAP40222 546 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 BNIP3Q12983 259 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 BIRC3Q13489 604 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 NCOA4Q13772 614 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 TTC31Q49AM3 519 aaPredicted RBP17.23■□□□□ 0.35
VIM-208ENST00000497849 ARHGAP40Q5TG30 622 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 SFMBT2Q5VUG0 894 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 ADIPOR2Q86V24 386 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 UNC93AQ86WB7 457 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 LURAP1LQ8IV03 231 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 ZNF248Q8NDW4 579 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 TTC9Q92623 222 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 NAF1Q96HR8 494 aaKnown RBP17.23■□□□□ 0.35
VIM-208ENST00000497849 TWNKQ96RR1 684 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 SERGEFQ9UGK8 458 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 PLA2G4CQ9UP65 541 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 USP3Q9Y6I4 520 aa17.23■□□□□ 0.35
VIM-208ENST00000497849 COL12A1Q99715 3063 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 FAM47DPA6NHR8 397 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 YKT6O15498 198 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 CLSTN1O94985 981 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 WISP1O95388 367 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 C4BPAP04003 597 aaKnown RBP17.22■□□□□ 0.35
VIM-208ENST00000497849 CKMT2P17540 419 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 GALCP54803 685 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 TMPRSS3P57727 454 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 PDE4CQ08493 712 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 KCNJ12Q14500 433 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 CHST9Q7L1S5 443 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 KANSL1Q7Z3B3 1105 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 KIAA0907Q7Z7F0 614 aaPredicted RBP17.22■□□□□ 0.35
VIM-208ENST00000497849 HIC2Q96JB3 615 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 ARID3AQ99856 593 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 MTG2Q9H4K7 406 aa17.22■□□□□ 0.35
VIM-208ENST00000497849 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.22■□□□□ 0.35
VIM-208ENST00000497849 LRRIQ3A6PVS8 624 aaPredicted RBP17.21■□□□□ 0.35
VIM-208ENST00000497849 CD38P28907 300 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 CLDN10P78369 228 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 ZNF776Q68DI1 518 aaPredicted RBP17.21■□□□□ 0.35
VIM-208ENST00000497849 NCEH1Q6PIU2 408 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 USP30Q70CQ3 517 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 NELFCDQ8IXH7 590 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 WFIKKN2Q8TEU8 576 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 GOLGA1Q92805 767 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 SKA1Q96BD8 255 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 CYFIP2Q96F07 1278 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 CDK5RAP1Q96SZ6 601 aaKnown RBP17.21■□□□□ 0.35
VIM-208ENST00000497849 RSPH9Q9H1X1 276 aaPredicted RBP17.21■□□□□ 0.35
VIM-208ENST00000497849 PABPC3Q9H361 631 aaKnown RBP17.21■□□□□ 0.35
VIM-208ENST00000497849 GDF3Q9NR23 364 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 AASDHPPTQ9NRN7 309 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 PCDHB1Q9Y5F3 818 aa17.21■□□□□ 0.35
VIM-208ENST00000497849 ACP1P24666 158 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 ASPAP45381 313 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 RXRGP48443 463 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 ARRB1P49407 418 aaPredicted RBP17.2■□□□□ 0.34
VIM-208ENST00000497849 UCNP55089 124 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 PCBP4P57723 403 aaKnown RBP17.2■□□□□ 0.34
VIM-208ENST00000497849 NXPH1P58417 271 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 SNRPFP62306 86 aaKnown RBP17.2■□□□□ 0.34
VIM-208ENST00000497849 MPPE1Q53F39 396 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 KDM7AQ6ZMT4 941 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.2■□□□□ 0.34
VIM-208ENST00000497849 PARD3BQ8TEW8 1205 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 ZNF578Q96N58 590 aaPredicted RBP17.2■□□□□ 0.34
VIM-208ENST00000497849 ABCB8Q9NUT2 735 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 FBXL12Q9NXK8 326 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 MARCH2Q9P0N8 246 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 NCKAP1Q9Y2A7 1128 aa17.2■□□□□ 0.34
VIM-208ENST00000497849 SLC12A8A0AV02 714 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 SLC28A2O43868 658 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 MT-CO3P00414 261 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 DLDP09622 509 aaKnown RBP17.19■□□□□ 0.34
VIM-208ENST00000497849 KRT10P13645 584 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 AP3M2P53677 418 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 SRSF1Q07955 248 aaKnown RBP eCLIP17.19■□□□□ 0.34
VIM-208ENST00000497849 PROX2Q3B8N5 592 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 BROXQ5VW32 411 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 MBLAC2Q68D91 279 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 SPOPLQ6IQ16 392 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 C12orf56Q8IXR9 622 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 AHI1Q8N157 1196 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 PDILTQ8N807 584 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 GANCQ8TET4 914 aa17.19■□□□□ 0.34
VIM-208ENST00000497849 SNRNP27Q8WVK2 155 aaKnown RBP17.19■□□□□ 0.34
VIM-208ENST00000497849 MYO19Q96H55 970 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms