RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 KCNU1A8MYU2 1149 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 INPPL1O15357 1258 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 USP12O75317 370 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 ENO1P06733 434 aaKnown RBP6.76□□□□□ -1.33
USP40-213ENST00000483216 THBS4P35443 961 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 YPEL5P62699 121 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 DMWDQ09019 674 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 FOXO1Q12778 655 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 ATPAF1Q5TC12 328 aaPredicted RBP6.76□□□□□ -1.33
USP40-213ENST00000483216 RFX6Q8HWS3 928 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 OR1N1Q8NGS0 311 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 BCAS4Q8TDM0 211 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 TRMT61AQ96FX7 289 aaKnown RBP6.76□□□□□ -1.33
USP40-213ENST00000483216 REXO5Q96IC2 774 aaKnown RBP6.76□□□□□ -1.33
USP40-213ENST00000483216 RTKNQ9BST9 563 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 C1QTNF7Q9BXJ2 289 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 DACT1Q9NYF0 836 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 ZNF70Q9UC06 446 aaPredicted RBP6.76□□□□□ -1.33
USP40-213ENST00000483216 CNTN6Q9UQ52 1028 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 EIF4G1Q04637 1599 aaKnown RBP6.76□□□□□ -1.33
USP40-213ENST00000483216 WIZO95785 1651 aa6.76□□□□□ -1.33
USP40-213ENST00000483216 FAM90A18PA6NE21 464 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 FAM90A16PA6NEW6 464 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 FAM90A9PA6NNJ1 464 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 FAM90A5PA8MXJ8 464 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 M0QYT0 321 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 ACKR2O00590 384 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 LARGE1O95461 756 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 SGPL1O95470 568 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 PLAUP00749 431 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 FAM90A15PP0C7V4 464 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 FAM90A14PP0C7W9 464 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 CDK7P50613 346 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 TLE3Q04726 772 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 TRIP6Q15654 476 aaKnown RBP6.75□□□□□ -1.33
USP40-213ENST00000483216 CCDC38Q502W7 563 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 ANKRD40Q6AI12 368 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 DEF8Q6ZN54 512 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 RBM44Q6ZP01 1051 aaKnown RBP6.75□□□□□ -1.33
USP40-213ENST00000483216 UEVLDQ8IX04 471 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 CACNA2D3Q8IZS8 1091 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 SRFBP1Q8NEF9 429 aaKnown RBP6.75□□□□□ -1.33
USP40-213ENST00000483216 CUL5Q93034 780 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 SIGLEC11Q96RL6 698 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 TRIM2Q9C040 744 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 CCDC134Q9H6E4 229 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 MLXIPLQ9NP71 852 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 B3GNT3Q9Y2A9 372 aa6.75□□□□□ -1.33
USP40-213ENST00000483216 KIF28PB7ZC32 967 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 TRIM38O00635 465 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 LDHAP00338 332 aaKnown RBP6.74□□□□□ -1.33
USP40-213ENST00000483216 CYP3A4P08684 503 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 CD63P08962 238 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 IGFBP2P18065 325 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 RPS6KB1P23443 525 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 RPL15P61313 204 aaKnown RBP6.74□□□□□ -1.33
USP40-213ENST00000483216 RBM6P78332 1123 aaKnown RBP6.74□□□□□ -1.33
USP40-213ENST00000483216 EARS2Q5JPH6 523 aaKnown RBP6.74□□□□□ -1.33
USP40-213ENST00000483216 ZNF569Q5MCW4 686 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 PRSS3P2Q8NHM4 247 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 PIGKQ92643 395 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 RPL36ALQ969Q0 106 aaKnown RBP6.74□□□□□ -1.33
USP40-213ENST00000483216 PRDM8Q9NQV8 689 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 LRFN1Q9P244 771 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 SMARCA4P51532 1647 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 CC2D2AQ9P2K1 1620 aa6.74□□□□□ -1.33
USP40-213ENST00000483216 C3orf70A6NLC5 250 aaPredicted RBP6.73□□□□□ -1.33
USP40-213ENST00000483216 EFCAB8A8MWE9 144 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 PEX14O75381 377 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 ACTL6BO94805 426 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 KAT7O95251 611 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 GYS1P13807 737 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 HOXA7P31268 230 aaPredicted RBP6.73□□□□□ -1.33
USP40-213ENST00000483216 SOX2P48431 317 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 FOXL2P58012 376 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 RPS13P62277 151 aaKnown RBP6.73□□□□□ -1.33
USP40-213ENST00000483216 SF3A3Q12874 501 aaKnown RBP eCLIP6.73□□□□□ -1.33
USP40-213ENST00000483216 BTBD16Q32M84 506 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 SLC9C1Q4G0N8 1177 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 C10orf62Q5T681 223 aaPredicted RBP6.73□□□□□ -1.33
USP40-213ENST00000483216 PAPD7Q5XG87 772 aaKnown RBP6.73□□□□□ -1.33
USP40-213ENST00000483216 TANGO2Q6ICL3 276 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 LIN54Q6MZP7 749 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 NFRKBQ6P4R8 1299 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 KLHL17Q6TDP4 642 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 SLC39A5Q6ZMH5 540 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 C1QL2Q7Z5L3 287 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 SLC44A2Q8IWA5 706 aaPredicted RBP6.73□□□□□ -1.33
USP40-213ENST00000483216 STT3BQ8TCJ2 826 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 PIGOQ8TEQ8 1089 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 GPR78Q96P69 363 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 MECRQ9BV79 373 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 SLC29A3Q9BZD2 475 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 PABPC3Q9H361 631 aaKnown RBP6.73□□□□□ -1.33
USP40-213ENST00000483216 PRDM16Q9HAZ2 1276 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 ERVK-5Q9HDB9 667 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 TUBA8Q9NY65 449 aaPredicted RBP6.73□□□□□ -1.33
USP40-213ENST00000483216 EMSYQ7Z589 1322 aa6.73□□□□□ -1.33
USP40-213ENST00000483216 SLC38A8A6NNN8 435 aa6.72□□□□□ -1.33
USP40-213ENST00000483216 INO80B-WBP1J3KQ70 363 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms