RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 AEBP2Q6ZN18 517 aaPredicted RBP32.3■■■□□ 2.76
USP40-213ENST00000483216 CHIC1Q5VXU3 224 aa31.65■■■□□ 2.66
USP40-213ENST00000483216 PHF23Q9BUL5 403 aaPredicted RBP27.82■■■□□ 2.04
USP40-213ENST00000483216 SENP3Q9H4L4 574 aaPredicted RBP27.43■■□□□ 1.98
USP40-213ENST00000483216 PLPPR3Q6T4P5 718 aa25.74■■□□□ 1.71
USP40-213ENST00000483216 FOXD1Q16676 465 aa25.43■■□□□ 1.66
USP40-213ENST00000483216 PPP6R1Q9UPN7 881 aa24.51■■□□□ 1.51
USP40-213ENST00000483216 ADRA2BP18089 450 aa24.48■■□□□ 1.51
USP40-213ENST00000483216 PIAS4Q8N2W9 510 aaPredicted RBP23.99■■□□□ 1.43
USP40-213ENST00000483216 MSH5O43196 834 aa23.45■■□□□ 1.34
USP40-213ENST00000483216 PPP4R3CPQ6ZMV5 832 aa22.67■■□□□ 1.22
USP40-213ENST00000483216 SCAF1Q9H7N4 1312 aaKnown RBP22.46■■□□□ 1.19
USP40-213ENST00000483216 KCNA4P22459 653 aa22.21■■□□□ 1.15
USP40-213ENST00000483216 MAPK8IP2Q13387 824 aaPredicted RBP22.19■■□□□ 1.14
USP40-213ENST00000483216 NCBP3Q53F19 620 aaKnown RBP22.12■■□□□ 1.13
USP40-213ENST00000483216 CNKSR2Q8WXI2 1034 aa22.04■■□□□ 1.12
USP40-213ENST00000483216 DMRT2Q9Y5R5 561 aa21.91■■□□□ 1.1
USP40-213ENST00000483216 NPM3O75607 178 aaKnown RBP21.77■■□□□ 1.08
USP40-213ENST00000483216 RNF216Q9NWF9 866 aaPredicted RBP21.6■■□□□ 1.05
USP40-213ENST00000483216 HOXD11P31277 338 aaPredicted RBP21.5■■□□□ 1.03
USP40-213ENST00000483216 DNAJC5BQ9UF47 199 aa21.23■□□□□ 0.99
USP40-213ENST00000483216 POTEDQ86YR6 584 aa21.19■□□□□ 0.98
USP40-213ENST00000483216 SLC4A1APQ9BWU0 796 aaKnown RBP21.17■□□□□ 0.98
USP40-213ENST00000483216 DCAF8L1A6NGE4 600 aa20.88■□□□□ 0.93
USP40-213ENST00000483216 EHMT2Q96KQ7 1210 aa20.6■□□□□ 0.89
USP40-213ENST00000483216 SLC4A2P04920 1241 aa20.54■□□□□ 0.88
USP40-213ENST00000483216 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.44■□□□□ 0.866e-6■■■□□ 19.2
USP40-213ENST00000483216 FOXD4L1Q9NU39 408 aa20.44■□□□□ 0.86
USP40-213ENST00000483216 ZBTB22O15209 634 aa20.43■□□□□ 0.86
USP40-213ENST00000483216 CSRNP3Q8WYN3 585 aa20.39■□□□□ 0.85
USP40-213ENST00000483216 MYCNP04198 464 aaPredicted RBP20.13■□□□□ 0.81
USP40-213ENST00000483216 U3KPZ7 1027 aaPredicted RBP20.13■□□□□ 0.81
USP40-213ENST00000483216 RNF39Q9H2S5 420 aa20.09■□□□□ 0.81
USP40-213ENST00000483216 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.94■□□□□ 0.78
USP40-213ENST00000483216 HNRNPUL2Q1KMD3 747 aaKnown RBP19.94■□□□□ 0.78
USP40-213ENST00000483216 C1QBPQ07021 282 aaKnown RBP19.87■□□□□ 0.77
USP40-213ENST00000483216 SAMD1Q6SPF0 538 aaPredicted RBP19.86■□□□□ 0.77
USP40-213ENST00000483216 ATXN8OSP0DMR3 200 aa19.77■□□□□ 0.76
USP40-213ENST00000483216 APLP2Q06481 763 aa19.72■□□□□ 0.75
USP40-213ENST00000483216 ATF5Q9Y2D1 282 aaPredicted RBP19.55■□□□□ 0.72
USP40-213ENST00000483216 SPINK5Q9NQ38 1064 aaPredicted RBP19.52■□□□□ 0.72
USP40-213ENST00000483216 CACNB1Q02641 598 aaPredicted RBP19.49■□□□□ 0.71
USP40-213ENST00000483216 CAPN15O75808 1086 aa19.45■□□□□ 0.7
USP40-213ENST00000483216 ZNF219Q9P2Y4 722 aaPredicted RBP19.41■□□□□ 0.7
USP40-213ENST00000483216 TRHP20396 242 aaPredicted RBP19.36■□□□□ 0.69
USP40-213ENST00000483216 DSG3P32926 999 aa19.14■□□□□ 0.65
USP40-213ENST00000483216 POLA2Q14181 598 aa19.09■□□□□ 0.65
USP40-213ENST00000483216 ABCB7O75027 752 aa19.07■□□□□ 0.64
USP40-213ENST00000483216 ZBTB12Q9Y330 459 aaPredicted RBP18.83■□□□□ 0.6
USP40-213ENST00000483216 FBLN2P98095 1184 aa18.75■□□□□ 0.59
USP40-213ENST00000483216 MKRN4PQ13434 485 aaPredicted RBP18.72■□□□□ 0.59
USP40-213ENST00000483216 OSCARQ8IYS5 282 aa18.42■□□□□ 0.54
USP40-213ENST00000483216 FKBP8Q14318 412 aa18.4■□□□□ 0.54
USP40-213ENST00000483216 SPDYE4A6NLX3 237 aa18.34■□□□□ 0.53
USP40-213ENST00000483216 SPDYE2BA6NHP3 402 aa18.31■□□□□ 0.52
USP40-213ENST00000483216 SPDYE6P0CI01 402 aa18.31■□□□□ 0.52
USP40-213ENST00000483216 SPDYE2Q495Y8 402 aa18.31■□□□□ 0.52
USP40-213ENST00000483216 RBM42Q9BTD8 480 aaKnown RBP18.25■□□□□ 0.51
USP40-213ENST00000483216 ZNF692Q9BU19 519 aaPredicted RBP18.22■□□□□ 0.51
USP40-213ENST00000483216 SSUH2Q9Y2M2 353 aa18.18■□□□□ 0.5
USP40-213ENST00000483216 PROM2Q8N271 834 aa18.09■□□□□ 0.49
USP40-213ENST00000483216 AKT1S1Q96B36 256 aa18.05■□□□□ 0.48
USP40-213ENST00000483216 PABPN1Q86U42 306 aaKnown RBP eCLIP17.98■□□□□ 0.47
USP40-213ENST00000483216 REM2Q8IYK8 340 aaPredicted RBP17.85■□□□□ 0.45
USP40-213ENST00000483216 FBXO3Q9UK99 471 aa17.78■□□□□ 0.44
USP40-213ENST00000483216 SPDYE1Q8NFV5 336 aaPredicted RBP17.75■□□□□ 0.43
USP40-213ENST00000483216 STAG3Q9UJ98 1225 aa17.74■□□□□ 0.43
USP40-213ENST00000483216 PITPNM1O00562 1244 aa17.63■□□□□ 0.41
USP40-213ENST00000483216 CLEC11AQ9Y240 323 aa17.62■□□□□ 0.41
USP40-213ENST00000483216 VASPP50552 380 aaPredicted RBP17.51■□□□□ 0.39
USP40-213ENST00000483216 PRR29P0C7W0 189 aa17.5■□□□□ 0.39
USP40-213ENST00000483216 CHRDL2Q6WN34 429 aa17.44■□□□□ 0.38
USP40-213ENST00000483216 MIER1Q8N108 512 aa17.38■□□□□ 0.37
USP40-213ENST00000483216 PLCD3Q8N3E9 789 aa17.35■□□□□ 0.37
USP40-213ENST00000483216 FXR2P51116 673 aaKnown RBP eCLIP17.32■□□□□ 0.36
USP40-213ENST00000483216 PLEKHG5O94827 1062 aa17.3■□□□□ 0.36
USP40-213ENST00000483216 CREBZFQ9NS37 354 aa17.3■□□□□ 0.36
USP40-213ENST00000483216 IFNLR1Q8IU57 520 aaPredicted RBP17.27■□□□□ 0.36
USP40-213ENST00000483216 PIP4P2Q8N4L2 257 aa17.23■□□□□ 0.35
USP40-213ENST00000483216 ZBTB47Q9UFB7 747 aaPredicted RBP17.2■□□□□ 0.34
USP40-213ENST00000483216 PRKAR2AP13861 404 aaKnown RBP17.19■□□□□ 0.34
USP40-213ENST00000483216 CHADLQ6NUI6 762 aa17.17■□□□□ 0.34
USP40-213ENST00000483216 KLHL34Q8N239 644 aa17.17■□□□□ 0.34
USP40-213ENST00000483216 MNX1P50219 401 aaPredicted RBP17.14■□□□□ 0.33
USP40-213ENST00000483216 SPOCK2Q92563 424 aa17.07■□□□□ 0.32
USP40-213ENST00000483216 FARP1Q9Y4F1 1045 aaPredicted RBP17.06■□□□□ 0.32
USP40-213ENST00000483216 NPM1P06748 294 aaKnown RBP eCLIP17.03■□□□□ 0.32
USP40-213ENST00000483216 NUBP1P53384 320 aa16.95■□□□□ 0.3
USP40-213ENST00000483216 AMER1Q5JTC6 1135 aaPredicted RBP16.93■□□□□ 0.3
USP40-213ENST00000483216 RASEFQ8IZ41 740 aa16.84■□□□□ 0.29
USP40-213ENST00000483216 RTN4Q9NQC3 1192 aaKnown RBP16.83■□□□□ 0.28
USP40-213ENST00000483216 POTEHQ6S545 545 aa16.81■□□□□ 0.28
USP40-213ENST00000483216 GSE1Q14687 1217 aa16.79■□□□□ 0.28
USP40-213ENST00000483216 FAM212AQ96EL1 285 aa16.79■□□□□ 0.28
USP40-213ENST00000483216 DCAF8Q5TAQ9 597 aa16.76■□□□□ 0.27
USP40-213ENST00000483216 CIZ1Q9ULV3 898 aaPredicted RBP16.76■□□□□ 0.27
USP40-213ENST00000483216 C19orf67A6NJJ6 358 aa16.72■□□□□ 0.27
USP40-213ENST00000483216 PKD2Q13563 968 aa16.72■□□□□ 0.27
USP40-213ENST00000483216 PAK3O75914 559 aaPredicted RBP16.71■□□□□ 0.27
USP40-213ENST00000483216 CD44P16070 742 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms