RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 LIMD1Q9UGP4 676 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 NAGPAQ9UK23 515 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 CRYL1Q9Y2S2 319 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 ARHGEF33A8MVX0 844 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 ERVV-1B6SEH8 477 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 AP3S2P59780 193 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 AGMOQ6ZNB7 445 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 DENND5BQ6ZUT9 1274 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.89□□□□□ -0.511e-6■■■□□ 16
VPS13A-205ENST00000376636 TMEM216Q9P0N5 145 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 ACOT9Q9Y305 439 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 IRGMA1A4Y4 181 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 PCP4L1A6NKN8 68 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 IL12AP29459 219 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 LRPAP1P30533 357 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 RGS7P49802 495 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 OLR1P78380 273 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 DGCR6Q14129 220 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 USPL1Q5W0Q7 1092 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 STK32CQ86UX6 486 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 TCAIMQ8N3R3 496 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 OTUD5Q96G74 571 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 EHD1Q9H4M9 534 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 METTL5Q9NRN9 209 aaKnown RBP11.89□□□□□ -0.51
VPS13A-205ENST00000376636 CROCCQ5TZA2 2017 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 GNB5O14775 395 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 SERPINA1P01009 418 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 RFC5P40937 340 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 NOTUMQ6P988 496 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 BHLHB9Q6PI77 547 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 HPS6Q86YV9 775 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 LRRC34Q8IZ02 419 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 OSBP2Q969R2 916 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 BBS4Q96RK4 519 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 RNF146Q9NTX7 359 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 CROTQ9UKG9 612 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 FAM50BQ9Y247 325 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 INVSQ9Y283 1065 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 MAGEB3O15480 346 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 TEX33O43247 280 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 RAD17O75943 681 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 TMEM253P0C7T8 217 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 CASP5P51878 434 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 LENG1Q96BZ8 264 aaPredicted RBP11.89□□□□□ -0.51
VPS13A-205ENST00000376636 RPRD1AQ96P16 312 aaPredicted RBP11.89□□□□□ -0.51
VPS13A-205ENST00000376636 GPAMQ9HCL2 828 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 GSSP48637 474 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 DLG1Q12959 904 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 TYSND1Q2T9J0 566 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 MAGEC3Q8TD91 643 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 TBCDQ9BTW9 1192 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 LY9Q9HBG7 655 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 LRG1P02750 347 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 HMBSP08397 361 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 CHN2P52757 468 aa11.89□□□□□ -0.51
VPS13A-205ENST00000376636 ZNF655Q8N720 491 aaPredicted RBP11.89□□□□□ -0.51
VPS13A-205ENST00000376636 GPC6Q9Y625 555 aaPredicted RBP11.89□□□□□ -0.51
VPS13A-205ENST00000376636 CDK12Q9NYV4 1490 aaPredicted RBP11.89□□□□□ -0.51
VPS13A-205ENST00000376636 PRR29P0C7W0 189 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 EPHB2P29323 1055 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 HALP42357 657 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 GRSF1Q12849 480 aaKnown RBP eCLIP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 TTC37Q6PGP7 1564 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 SLC26A11Q86WA9 606 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 FBXO36Q8NEA4 188 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 SYTL5Q8TDW5 730 aaPredicted RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 TEX13BQ9BXU2 312 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 A1CFQ9NQ94 594 aaKnown RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 C15orf41Q9Y2V0 281 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 OR14I1A6ND48 311 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 PRMT3O60678 531 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 CRABP2P29373 138 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 GSTT1P30711 240 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 Q4G0T1 1027 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 KCTD21Q4G0X4 260 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 KBTBD7Q8WVZ9 684 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 DNAJC1Q96KC8 554 aaKnown RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 C7orf25Q9BPX7 421 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 FICDQ9BVA6 458 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 NIF3L1Q9GZT8 377 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 ANTXR1Q9H6X2 564 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 AFF2P51816 1311 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 GLB1LQ6UWU2 654 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 PSMA8Q8TAA3 256 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 CELF4Q9BZC1 486 aaKnown RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 PCDHB7Q9Y5E2 793 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 G3V2T6 193 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 GLRBP48167 497 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 EPS8L3Q8TE67 593 aaKnown RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 PPIEQ9UNP9 301 aaKnown RBP11.88□□□□□ -0.51
VPS13A-205ENST00000376636 DNAJC16Q9Y2G8 782 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 TBC1D30Q9Y2I9 924 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 TBX22Q9Y458 520 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 ACSL4O60488 711 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 FAM187BQ17R55 369 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 AIFM3Q96NN9 605 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 AP1S3Q96PC3 154 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 TRIM9Q9C026 710 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 GRIP2Q9C0E4 1043 aa11.88□□□□□ -0.51
VPS13A-205ENST00000376636 TMCO1Q9UM00 188 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms