RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 BZW1Q7L1Q6 419 aaKnown RBP20.54■□□□□ 0.88
TRIM47-204ENST00000587339 PCGF5Q86SE9 256 aa20.54■□□□□ 0.88
TRIM47-204ENST00000587339 COLGALT1Q8NBJ5 622 aa20.54■□□□□ 0.88
TRIM47-204ENST00000587339 FBXO32Q969P5 355 aa20.54■□□□□ 0.88
TRIM47-204ENST00000587339 AAASQ9NRG9 546 aa20.54■□□□□ 0.88
TRIM47-204ENST00000587339 GMIPQ9P107 970 aa20.54■□□□□ 0.88
TRIM47-204ENST00000587339 OR12D3Q9UGF7 316 aa20.54■□□□□ 0.88
TRIM47-204ENST00000587339 NUDT5Q9UKK9 219 aa20.54■□□□□ 0.88
TRIM47-204ENST00000587339 RBL1P28749 1068 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 CCR1P32246 355 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 ACTN2P35609 894 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 TPI1P60174 286 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 DPYSQ14117 519 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 MORF4L2Q15014 288 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 BRMS1LQ5PSV4 323 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 LRIG3Q6UXM1 1119 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 CDKL3Q8IVW4 592 aaPredicted RBP20.53■□□□□ 0.88
TRIM47-204ENST00000587339 SERPINB11Q96P15 392 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 SH3GL2Q99962 352 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 SEMA4AQ9H3S1 761 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 USP29Q9HBJ7 922 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 SPG21Q9NZD8 308 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 MFHAS1Q9Y4C4 1052 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 MYO16Q9Y6X6 1858 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 ZBBXA8MT70 800 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 MSI1O43347 362 aaKnown RBP20.53■□□□□ 0.88
TRIM47-204ENST00000587339 EN2P19622 333 aaPredicted RBP20.53■□□□□ 0.88
TRIM47-204ENST00000587339 HCAR3P49019 387 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 GLUD2P49448 558 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 ZNF135P52742 658 aaPredicted RBP20.53■□□□□ 0.88
TRIM47-204ENST00000587339 NRLP54845 237 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 DSG1Q02413 1049 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 RNASEH2BQ5TBB1 312 aaKnown RBP20.53■□□□□ 0.88
TRIM47-204ENST00000587339 EPAS1Q99814 870 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 CLSTN3Q9BQT9 956 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 ARHGEF38Q9NXL2 777 aa20.53■□□□□ 0.88
TRIM47-204ENST00000587339 H0YGN5 161 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 POLR3GO15318 223 aaPredicted RBP20.52■□□□□ 0.88
TRIM47-204ENST00000587339 RNF40O75150 1001 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 TUFMP49411 452 aaKnown RBP20.52■□□□□ 0.88
TRIM47-204ENST00000587339 PSEN1P49768 467 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 TAF10Q12962 218 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 SLC45A4Q5BKX6 768 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 C16orf59Q7L2K0 433 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 UBE2Q1Q7Z7E8 422 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 ZCCHC9Q8N567 271 aaKnown RBP20.52■□□□□ 0.88
TRIM47-204ENST00000587339 OR2W6PQ8NHA6 318 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 FOXP3Q9BZS1 431 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 TLR8Q9NR97 1041 aaKnown RBP20.52■□□□□ 0.88
TRIM47-204ENST00000587339 COMMD8Q9NX08 183 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 CLIC5Q9NZA1 410 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 SHOC2Q9UQ13 582 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 NFS1Q9Y697 457 aa20.52■□□□□ 0.88
TRIM47-204ENST00000587339 MFSD11O43934 449 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 ERCC2P18074 760 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 ATF6P18850 670 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 PPIGQ13427 754 aaKnown RBP eCLIP20.51■□□□□ 0.879e-7■■□□□ 14.4
TRIM47-204ENST00000587339 DENND2CQ68D51 928 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 TRMT10CQ7L0Y3 403 aaKnown RBP20.51■□□□□ 0.87
TRIM47-204ENST00000587339 ZNF461Q8TAF7 563 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 GIPC2Q8TF65 315 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 RTP4Q96DX8 246 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 PWWP2AQ96N64 755 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 OLFM3Q96PB7 478 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 HERC2P3Q9BVR0 1158 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 EPB41L4BQ9H329 900 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 AFF4Q9UHB7 1163 aaKnown RBP20.51■□□□□ 0.87
TRIM47-204ENST00000587339 DCLK1O15075 740 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 FGBP02675 491 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 SLC29A2Q14542 456 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 PPP2R5DQ14738 602 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 PAFAH1B3Q15102 231 aaKnown RBP20.51■□□□□ 0.87
TRIM47-204ENST00000587339 CEP85LQ5SZL2 805 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 MSANTD2Q6P1R3 559 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 CEP128Q6ZU80 1094 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 DDX53Q86TM3 631 aaKnown RBP20.51■□□□□ 0.87
TRIM47-204ENST00000587339 PPIL6Q8IXY8 311 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 CCDC33Q8N5R6 958 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 LRRN4Q8WUT4 740 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 HAPLN3Q96S86 360 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 OSBPL2Q9H1P3 480 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 CDC42EP4Q9H3Q1 356 aaKnown RBP20.51■□□□□ 0.87
TRIM47-204ENST00000587339 DNAJC17Q9NVM6 304 aaKnown RBP20.51■□□□□ 0.87
TRIM47-204ENST00000587339 TMEM51Q9NW97 253 aa20.51■□□□□ 0.87
TRIM47-204ENST00000587339 FARP1Q9Y4F1 1045 aaPredicted RBP20.51■□□□□ 0.87
TRIM47-204ENST00000587339 PLXNA3P51805 1871 aa20.5■□□□□ 0.87
TRIM47-204ENST00000587339 RIPK2O43353 540 aa20.5■□□□□ 0.87
TRIM47-204ENST00000587339 LRIG2O94898 1065 aa20.5■□□□□ 0.87
TRIM47-204ENST00000587339 URODP06132 367 aa20.5■□□□□ 0.87
TRIM47-204ENST00000587339 EPHB2P29323 1055 aa20.5■□□□□ 0.87
TRIM47-204ENST00000587339 PPM1AP35813 382 aa20.5■□□□□ 0.87
TRIM47-204ENST00000587339 EIF3BP55884 814 aaKnown RBP20.5■□□□□ 0.87
TRIM47-204ENST00000587339 BASP1P80723 227 aaKnown RBP20.5■□□□□ 0.87
TRIM47-204ENST00000587339 HEATR6Q6AI08 1181 aaKnown RBP20.5■□□□□ 0.87
TRIM47-204ENST00000587339 PDZD4Q76G19 769 aaPredicted RBP20.5■□□□□ 0.87
TRIM47-204ENST00000587339 TAB3Q8N5C8 712 aaPredicted RBP20.5■□□□□ 0.87
TRIM47-204ENST00000587339 TFB1MQ8WVM0 346 aaKnown RBP20.5■□□□□ 0.87
TRIM47-204ENST00000587339 CPT1BQ92523 772 aa20.5■□□□□ 0.87
TRIM47-204ENST00000587339 CEP295NLQ96MC4 621 aa20.5■□□□□ 0.87
TRIM47-204ENST00000587339 QKIQ96PU8 341 aaKnown RBP eCLIP20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms