RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 IL37Q9NZH6 218 aa18.77■□□□□ 0.6
SMC4-211ENST00000469858 TPX2Q9ULW0 747 aaKnown RBP18.77■□□□□ 0.6
SMC4-211ENST00000469858 SNX10Q9Y5X0 201 aa18.77■□□□□ 0.6
SMC4-211ENST00000469858 POLR3GO15318 223 aaPredicted RBP18.77■□□□□ 0.59
SMC4-211ENST00000469858 MFSD11O43934 449 aa18.77■□□□□ 0.59
SMC4-211ENST00000469858 RBL1P28749 1068 aa18.77■□□□□ 0.59
SMC4-211ENST00000469858 TPI1P60174 286 aa18.77■□□□□ 0.59
SMC4-211ENST00000469858 RPL10AP62906 217 aaKnown RBP18.77■□□□□ 0.59
SMC4-211ENST00000469858 SEMA3BQ13214 749 aa18.77■□□□□ 0.59
SMC4-211ENST00000469858 ARHGAP18Q8N392 663 aa18.77■□□□□ 0.59
SMC4-211ENST00000469858 GOLGA6L1Q8N7Z2 621 aa18.77■□□□□ 0.59
SMC4-211ENST00000469858 OR2W6PQ8NHA6 318 aa18.77■□□□□ 0.59
SMC4-211ENST00000469858 GIPC2Q8TF65 315 aa18.77■□□□□ 0.59
SMC4-211ENST00000469858 SPATA17Q96L03 361 aa18.77■□□□□ 0.59
SMC4-211ENST00000469858 DTLQ9NZJ0 730 aa18.77■□□□□ 0.59
SMC4-211ENST00000469858 RARGP13631 454 aa18.76■□□□□ 0.59
SMC4-211ENST00000469858 GLUD2P49448 558 aa18.76■□□□□ 0.59
SMC4-211ENST00000469858 EIF4EBP2Q13542 120 aaPredicted RBP18.76■□□□□ 0.59
SMC4-211ENST00000469858 DPYSQ14117 519 aa18.76■□□□□ 0.59
SMC4-211ENST00000469858 SPDYCQ5MJ68 293 aa18.76■□□□□ 0.59
SMC4-211ENST00000469858 CDKL3Q8IVW4 592 aaPredicted RBP18.76■□□□□ 0.59
SMC4-211ENST00000469858 CLSTN3Q9BQT9 956 aa18.76■□□□□ 0.59
SMC4-211ENST00000469858 PABPC3Q9H361 631 aaKnown RBP18.76■□□□□ 0.59
SMC4-211ENST00000469858 SEMA4AQ9H3S1 761 aa18.76■□□□□ 0.59
SMC4-211ENST00000469858 USP29Q9HBJ7 922 aa18.76■□□□□ 0.59
SMC4-211ENST00000469858 SPG21Q9NZD8 308 aa18.76■□□□□ 0.59
SMC4-211ENST00000469858 PRKAG2Q9UGJ0 569 aa18.76■□□□□ 0.59
SMC4-211ENST00000469858 FAM92AA1XBS5 289 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 BCLAF3A2AJT9 711 aaKnown RBP18.75■□□□□ 0.59
SMC4-211ENST00000469858 OPA1O60313 960 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 ATF6P18850 670 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 TAF10Q12962 218 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 FAM182AQ5T1J6 154 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 RNASEH2BQ5TBB1 312 aaKnown RBP18.75■□□□□ 0.59
SMC4-211ENST00000469858 C16orf59Q7L2K0 433 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 SH3GL2Q99962 352 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 HERC2P3Q9BVR0 1158 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 TSPYL1Q9H0U9 437 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 EPB41L4BQ9H329 900 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 PRDM16Q9HAZ2 1276 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 OR12D3Q9UGF7 316 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 CFAP69A5D8W1 941 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 RNF40O75150 1001 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 CCR1P32246 355 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 DSG1Q02413 1049 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 XRCC4Q13426 336 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 MORF4L2Q15014 288 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 SLC45A4Q5BKX6 768 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 BRMS1LQ5PSV4 323 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 CEP85LQ5SZL2 805 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 UBAP2Q5T6F2 1119 aaKnown RBP18.75■□□□□ 0.59
SMC4-211ENST00000469858 UBE2Q1Q7Z7E8 422 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 NETO2Q8NC67 525 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 BADQ92934 168 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 SERPINB11Q96P15 392 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 EPAS1Q99814 870 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 MCOLN1Q9GZU1 580 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 ARHGEF38Q9NXL2 777 aa18.75■□□□□ 0.59
SMC4-211ENST00000469858 MAGED2Q9UNF1 606 aaPredicted RBP18.75■□□□□ 0.59
SMC4-211ENST00000469858 H0YGN5 161 aa18.74■□□□□ 0.59
SMC4-211ENST00000469858 DCLK1O15075 740 aa18.74■□□□□ 0.59
SMC4-211ENST00000469858 ERCC2P18074 760 aa18.74■□□□□ 0.59
SMC4-211ENST00000469858 ACTN2P35609 894 aa18.74■□□□□ 0.59
SMC4-211ENST00000469858 DENND2CQ68D51 928 aa18.74■□□□□ 0.59
SMC4-211ENST00000469858 LRIG3Q6UXM1 1119 aa18.74■□□□□ 0.59
SMC4-211ENST00000469858 ZCCHC9Q8N567 271 aaKnown RBP18.74■□□□□ 0.59
SMC4-211ENST00000469858 OLFM3Q96PB7 478 aa18.74■□□□□ 0.59
SMC4-211ENST00000469858 QKIQ96PU8 341 aaKnown RBP eCLIP18.74■□□□□ 0.597e-7■■■■■ 232.7
SMC4-211ENST00000469858 SIK2Q9H0K1 926 aa18.74■□□□□ 0.59
SMC4-211ENST00000469858 CDC42EP4Q9H3Q1 356 aaKnown RBP18.74■□□□□ 0.59
SMC4-211ENST00000469858 TLR8Q9NR97 1041 aaKnown RBP18.74■□□□□ 0.59
SMC4-211ENST00000469858 NFS1Q9Y697 457 aa18.74■□□□□ 0.59
SMC4-211ENST00000469858 SLC38A8A6NNN8 435 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 NDC80O14777 642 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 LRIG2O94898 1065 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 FGBP02675 491 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 URODP06132 367 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 DNAJB2P25686 324 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 BASP1P80723 227 aaKnown RBP18.73■□□□□ 0.59
SMC4-211ENST00000469858 PPIGQ13427 754 aaKnown RBP eCLIP18.73■□□□□ 0.592e-7■■■■■ 57.4
SMC4-211ENST00000469858 MSANTD2Q6P1R3 559 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 BZW1Q7L1Q6 419 aaKnown RBP18.73■□□□□ 0.59
SMC4-211ENST00000469858 PCGF5Q86SE9 256 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 RTP4Q96DX8 246 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 VPS18Q9P253 973 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 AFF4Q9UHB7 1163 aaKnown RBP18.73■□□□□ 0.59
SMC4-211ENST00000469858 SHOC2Q9UQ13 582 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 FARP1Q9Y4F1 1045 aaPredicted RBP18.73■□□□□ 0.59
SMC4-211ENST00000469858 EPHB2P29323 1055 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 HCAR3P49019 387 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 TUFMP49411 452 aaKnown RBP18.73■□□□□ 0.59
SMC4-211ENST00000469858 FPGSQ05932 587 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 ZNF844Q08AG5 666 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 EFEMP1Q12805 493 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 SLC29A2Q14542 456 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 PAFAH1B3Q15102 231 aaKnown RBP18.73■□□□□ 0.59
SMC4-211ENST00000469858 RASIP1Q5U651 963 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 DDX53Q86TM3 631 aaKnown RBP18.73■□□□□ 0.59
SMC4-211ENST00000469858 PPIL6Q8IXY8 311 aa18.73■□□□□ 0.59
SMC4-211ENST00000469858 VPS52Q8N1B4 723 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms