RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 NR4A3Q92570 626 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 LPAR1Q92633 364 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 KAT2BQ92831 832 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 MSI2Q96DH6 328 aaKnown RBP3.47□□□□□ -1.85
SCN1A-208ENST00000625916 P2RY11Q96G91 374 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 SENP7Q9BQF6 1050 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 RHOBTB2Q9BYZ6 727 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 C22orf23Q9BZE7 217 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 ASNSD1Q9NWL6 643 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 DDX56Q9NY93 547 aaKnown RBP3.47□□□□□ -1.85
SCN1A-208ENST00000625916 DKK4Q9UBT3 224 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 IPO11Q9UI26 975 aaKnown RBP3.47□□□□□ -1.85
SCN1A-208ENST00000625916 ZNF180Q9UJW8 692 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 ITGB1BP2Q9UKP3 347 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 TPCN1Q9ULQ1 816 aa3.47□□□□□ -1.85
SCN1A-208ENST00000625916 ZNF335Q9H4Z2 1342 aaPredicted RBP3.46□□□□□ -1.85
SCN1A-208ENST00000625916 TTC34A8MYJ7 566 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 ISM1B1AKI9 464 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 WDR47O94967 919 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 TXNP10599 105 aaKnown RBP3.46□□□□□ -1.86
SCN1A-208ENST00000625916 HOXA11P31270 313 aaPredicted RBP3.46□□□□□ -1.86
SCN1A-208ENST00000625916 LTBQ06643 244 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 CNGA2Q16280 664 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 SMTNL2Q2TAL5 461 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 GFI1BQ5VTD9 330 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 PLAG1Q6DJT9 500 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 SWSAP1Q6NVH7 229 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 GSG1LQ6UXU4 331 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 SLC39A5Q6ZMH5 540 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 OVCH2Q7RTZ1 564 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 TPH2Q8IWU9 490 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 ZCRB1Q8TBF4 217 aaKnown RBP3.46□□□□□ -1.86
SCN1A-208ENST00000625916 ZDHHC12Q96GR4 267 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 HTATIP2Q9BUP3 242 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 CHST8Q9H2A9 424 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 ABHD10Q9NUJ1 306 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 VPS51Q9UID3 782 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 HPSEQ9Y251 543 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 PCDHB2Q9Y5E7 798 aa3.46□□□□□ -1.86
SCN1A-208ENST00000625916 A0A0G2JK05 382 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 KIR2DS5A0A0G2JLQ3 304 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 KIR2DS3K7RE56 304 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 CTNND1O60716 968 aaKnown RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 ATG13O75143 517 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 PAPSS2O95340 614 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 BTF3P20290 206 aaKnown RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 DGKQP52824 942 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 RRP1P56182 461 aaKnown RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 RPL36AP83881 106 aaKnown RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 GAD2Q05329 585 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 PIN1Q13526 163 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 KEAP1Q14145 624 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 CNN3Q15417 329 aaKnown RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 MANEALQ5VSG8 457 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 CUZD1Q86UP6 607 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 FOXP4Q8IVH2 680 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 IPCEF1Q8WWN9 437 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 CELF1Q92879 486 aaKnown RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 TTLL2Q9BWV7 592 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 RNF26Q9BY78 433 aaPredicted RBP3.45□□□□□ -1.86
SCN1A-208ENST00000625916 AAMDCQ9H7C9 122 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 GJB4Q9NTQ9 266 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 OGDHLQ9ULD0 1010 aa3.45□□□□□ -1.86
SCN1A-208ENST00000625916 TRIP12Q14669 1992 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-208ENST00000625916 COL15A1P39059 1388 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 RPS10-NUDT3A0A1W2PQS6 291 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 E2F8A0AVK6 867 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 CAMTA2O94983 1202 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 MAP4K4O95819 1239 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-208ENST00000625916 ACAA1P09110 424 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-208ENST00000625916 CHRNB1P11230 501 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 IL1R1P14778 569 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 HTR7P34969 479 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 EGR4Q05215 589 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 C6orf10Q5SRN2 563 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 NADSYN1Q6IA69 706 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 APOA5Q6Q788 366 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 UNC13DQ70J99 1090 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 MBD3L2Q8NHZ7 208 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-208ENST00000625916 AKAP1Q92667 903 aaKnown RBP eCLIP3.44□□□□□ -1.86
SCN1A-208ENST00000625916 CENPIQ92674 756 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-208ENST00000625916 EME1Q96AY2 570 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 PIMREGQ9BSJ6 248 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 TMEM60Q9H2L4 133 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 HIF1ANQ9NWT6 349 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 COL20A1Q9P218 1284 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 WNT16Q9UBV4 365 aa3.44□□□□□ -1.86
SCN1A-208ENST00000625916 A6NNC1 897 aa3.43□□□□□ -1.86
SCN1A-208ENST00000625916 PRSS47A8MTI9 375 aa3.43□□□□□ -1.86
SCN1A-208ENST00000625916 PRYO14603 147 aa3.43□□□□□ -1.86
SCN1A-208ENST00000625916 PRPF3O43395 683 aaKnown RBP3.43□□□□□ -1.86
SCN1A-208ENST00000625916 FRS3O43559 492 aa3.43□□□□□ -1.86
SCN1A-208ENST00000625916 ALDH1L1O75891 902 aa3.43□□□□□ -1.86
SCN1A-208ENST00000625916 KRT10P13645 584 aa3.43□□□□□ -1.86
SCN1A-208ENST00000625916 NDUFS1P28331 727 aa3.43□□□□□ -1.86
SCN1A-208ENST00000625916 DUSP1P28562 367 aa3.43□□□□□ -1.86
SCN1A-208ENST00000625916 HOXD12P35452 270 aa3.43□□□□□ -1.86
SCN1A-208ENST00000625916 SOX2P48431 317 aa3.43□□□□□ -1.86
SCN1A-208ENST00000625916 CARSP49589 748 aaKnown RBP3.43□□□□□ -1.86
SCN1A-208ENST00000625916 GAS1P54826 345 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms