RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 AEBP2Q6ZN18 517 aaPredicted RBP22.45■■□□□ 1.18
SCN1A-208ENST00000625916 CHIC1Q5VXU3 224 aa21.4■■□□□ 1.02
SCN1A-208ENST00000625916 SENP3Q9H4L4 574 aaPredicted RBP19.19■□□□□ 0.66
SCN1A-208ENST00000625916 PHF23Q9BUL5 403 aaPredicted RBP18.94■□□□□ 0.62
SCN1A-208ENST00000625916 FOXD1Q16676 465 aa17.86■□□□□ 0.45
SCN1A-208ENST00000625916 PLPPR3Q6T4P5 718 aa17.15■□□□□ 0.34
SCN1A-208ENST00000625916 PIAS4Q8N2W9 510 aaPredicted RBP16.74■□□□□ 0.27
SCN1A-208ENST00000625916 MSH5O43196 834 aa16.72■□□□□ 0.27
SCN1A-208ENST00000625916 PPP6R1Q9UPN7 881 aa16.72■□□□□ 0.27
SCN1A-208ENST00000625916 ADRA2BP18089 450 aa16.7■□□□□ 0.26
SCN1A-208ENST00000625916 POTEDQ86YR6 584 aa16.2■□□□□ 0.18
SCN1A-208ENST00000625916 MAPK8IP2Q13387 824 aaPredicted RBP15.32■□□□□ 0.04
SCN1A-208ENST00000625916 SCAF1Q9H7N4 1312 aaKnown RBP15.32■□□□□ 0.04
SCN1A-208ENST00000625916 DMRT2Q9Y5R5 561 aa15.21■□□□□ 0.03
SCN1A-208ENST00000625916 PPP4R3CPQ6ZMV5 832 aa15.04■□□□□ -0
SCN1A-208ENST00000625916 CNKSR2Q8WXI2 1034 aa14.74□□□□□ -0.05
SCN1A-208ENST00000625916 DCAF8L1A6NGE4 600 aa14.67□□□□□ -0.06
SCN1A-208ENST00000625916 HOXD11P31277 338 aaPredicted RBP14.65□□□□□ -0.06
SCN1A-208ENST00000625916 RNF216Q9NWF9 866 aaPredicted RBP14.58□□□□□ -0.08
SCN1A-208ENST00000625916 NCBP3Q53F19 620 aaKnown RBP14.5□□□□□ -0.09
SCN1A-208ENST00000625916 CACNB1Q02641 598 aaPredicted RBP14.34□□□□□ -0.11
SCN1A-208ENST00000625916 NPM3O75607 178 aaKnown RBP14.25□□□□□ -0.13
SCN1A-208ENST00000625916 RNF39Q9H2S5 420 aa14.24□□□□□ -0.13
SCN1A-208ENST00000625916 DNAJC5BQ9UF47 199 aa14.12□□□□□ -0.15
SCN1A-208ENST00000625916 C1QBPQ07021 282 aaKnown RBP14.06□□□□□ -0.16
SCN1A-208ENST00000625916 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.04□□□□□ -0.162e-6■■■■□ 24.1
SCN1A-208ENST00000625916 KCNA4P22459 653 aa14.03□□□□□ -0.16
SCN1A-208ENST00000625916 U3KPZ7 1027 aaPredicted RBP13.7□□□□□ -0.22
SCN1A-208ENST00000625916 SLC4A2P04920 1241 aa13.58□□□□□ -0.24
SCN1A-208ENST00000625916 CAPN15O75808 1086 aa13.51□□□□□ -0.25
SCN1A-208ENST00000625916 SPINK5Q9NQ38 1064 aaPredicted RBP13.49□□□□□ -0.25
SCN1A-208ENST00000625916 APLP2Q06481 763 aa13.38□□□□□ -0.27
SCN1A-208ENST00000625916 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.37□□□□□ -0.27
SCN1A-208ENST00000625916 HNRNPUL2Q1KMD3 747 aaKnown RBP13.37□□□□□ -0.27
SCN1A-208ENST00000625916 DSG3P32926 999 aa13.36□□□□□ -0.27
SCN1A-208ENST00000625916 TRHP20396 242 aaPredicted RBP13.31□□□□□ -0.28
SCN1A-208ENST00000625916 SAMD1Q6SPF0 538 aaPredicted RBP13.29□□□□□ -0.28
SCN1A-208ENST00000625916 SLC4A1APQ9BWU0 796 aaKnown RBP13.28□□□□□ -0.28
SCN1A-208ENST00000625916 ZNF219Q9P2Y4 722 aaPredicted RBP13.26□□□□□ -0.29
SCN1A-208ENST00000625916 MYCNP04198 464 aaPredicted RBP13.2□□□□□ -0.3
SCN1A-208ENST00000625916 ABCB7O75027 752 aa13.19□□□□□ -0.3
SCN1A-208ENST00000625916 FOXD4L1Q9NU39 408 aa13.09□□□□□ -0.31
SCN1A-208ENST00000625916 POLA2Q14181 598 aa12.94□□□□□ -0.34
SCN1A-208ENST00000625916 ZBTB22O15209 634 aa12.87□□□□□ -0.35
SCN1A-208ENST00000625916 ATF5Q9Y2D1 282 aaPredicted RBP12.86□□□□□ -0.35
SCN1A-208ENST00000625916 RBM42Q9BTD8 480 aaKnown RBP12.79□□□□□ -0.36
SCN1A-208ENST00000625916 POTEHQ6S545 545 aa12.72□□□□□ -0.37
SCN1A-208ENST00000625916 ZBTB12Q9Y330 459 aaPredicted RBP12.69□□□□□ -0.38
SCN1A-208ENST00000625916 ATXN8OSP0DMR3 200 aa12.67□□□□□ -0.38
SCN1A-208ENST00000625916 OSCARQ8IYS5 282 aa12.52□□□□□ -0.41
SCN1A-208ENST00000625916 AKT1S1Q96B36 256 aa12.49□□□□□ -0.41
SCN1A-208ENST00000625916 CHRDL2Q6WN34 429 aa12.47□□□□□ -0.41
SCN1A-208ENST00000625916 FBLN2P98095 1184 aa12.43□□□□□ -0.42
SCN1A-208ENST00000625916 REM2Q8IYK8 340 aaPredicted RBP12.37□□□□□ -0.43
SCN1A-208ENST00000625916 CSRNP3Q8WYN3 585 aa12.35□□□□□ -0.43
SCN1A-208ENST00000625916 SPDYE2BA6NHP3 402 aa12.29□□□□□ -0.44
SCN1A-208ENST00000625916 SPDYE6P0CI01 402 aa12.29□□□□□ -0.44
SCN1A-208ENST00000625916 SPDYE2Q495Y8 402 aa12.29□□□□□ -0.44
SCN1A-208ENST00000625916 EHMT2Q96KQ7 1210 aa12.28□□□□□ -0.44
SCN1A-208ENST00000625916 MKRN4PQ13434 485 aaPredicted RBP12.27□□□□□ -0.45
SCN1A-208ENST00000625916 PITPNM1O00562 1244 aa12.23□□□□□ -0.45
SCN1A-208ENST00000625916 PIP4P2Q8N4L2 257 aa12.18□□□□□ -0.46
SCN1A-208ENST00000625916 ZNF692Q9BU19 519 aaPredicted RBP12.17□□□□□ -0.46
SCN1A-208ENST00000625916 FXR2P51116 673 aaKnown RBP eCLIP12.09□□□□□ -0.47
SCN1A-208ENST00000625916 CLEC11AQ9Y240 323 aa12.09□□□□□ -0.47
SCN1A-208ENST00000625916 SSUH2Q9Y2M2 353 aa12.09□□□□□ -0.47
SCN1A-208ENST00000625916 SPDYE1Q8NFV5 336 aaPredicted RBP12.08□□□□□ -0.48
SCN1A-208ENST00000625916 HAX1O00165 279 aa11.99□□□□□ -0.49
SCN1A-208ENST00000625916 PABPN1Q86U42 306 aaKnown RBP eCLIP11.99□□□□□ -0.49
SCN1A-208ENST00000625916 SP7Q8TDD2 431 aaPredicted RBP11.95□□□□□ -0.5
SCN1A-208ENST00000625916 PRKAR2AP13861 404 aaKnown RBP11.94□□□□□ -0.5
SCN1A-208ENST00000625916 PRR29P0C7W0 189 aa11.88□□□□□ -0.51
SCN1A-208ENST00000625916 CHADLQ6NUI6 762 aa11.81□□□□□ -0.52
SCN1A-208ENST00000625916 SPDYE4A6NLX3 237 aa11.77□□□□□ -0.53
SCN1A-208ENST00000625916 EVX2Q03828 476 aa11.77□□□□□ -0.53
SCN1A-208ENST00000625916 C19orf67A6NJJ6 358 aa11.71□□□□□ -0.53
SCN1A-208ENST00000625916 STAG3Q9UJ98 1225 aa11.67□□□□□ -0.54
SCN1A-208ENST00000625916 FARP1Q9Y4F1 1045 aaPredicted RBP11.64□□□□□ -0.55
SCN1A-208ENST00000625916 CD44P16070 742 aaKnown RBP11.57□□□□□ -0.56
SCN1A-208ENST00000625916 CREBZFQ9NS37 354 aa11.55□□□□□ -0.56
SCN1A-208ENST00000625916 GABBR2O75899 941 aa11.54□□□□□ -0.56
SCN1A-208ENST00000625916 ZRANB1Q9UGI0 708 aa11.42□□□□□ -0.58
SCN1A-208ENST00000625916 PROM2Q8N271 834 aa11.41□□□□□ -0.58
SCN1A-208ENST00000625916 NPM1P06748 294 aaKnown RBP eCLIP11.39□□□□□ -0.59
SCN1A-208ENST00000625916 CLCN6P51797 869 aa11.38□□□□□ -0.59
SCN1A-208ENST00000625916 PAK3O75914 559 aaPredicted RBP11.37□□□□□ -0.59
SCN1A-208ENST00000625916 ZNF579Q8NAF0 562 aaKnown RBP11.36□□□□□ -0.59
SCN1A-208ENST00000625916 MNX1P50219 401 aaPredicted RBP11.33□□□□□ -0.6
SCN1A-208ENST00000625916 DCBLD2Q96PD2 775 aa11.29□□□□□ -0.6
SCN1A-208ENST00000625916 PLEKHG5O94827 1062 aa11.26□□□□□ -0.61
SCN1A-208ENST00000625916 POTEIP0CG38 1075 aa11.26□□□□□ -0.61
SCN1A-208ENST00000625916 PHF12Q96QT6 1004 aa11.25□□□□□ -0.61
SCN1A-208ENST00000625916 FKBP8Q14318 412 aa11.24□□□□□ -0.61
SCN1A-208ENST00000625916 MIER1Q8N108 512 aa11.24□□□□□ -0.61
SCN1A-208ENST00000625916 GALR2O43603 387 aaPredicted RBP11.23□□□□□ -0.61
SCN1A-208ENST00000625916 LHX8Q68G74 356 aa11.22□□□□□ -0.61
SCN1A-208ENST00000625916 TSPYL2Q9H2G4 693 aaPredicted RBP11.19□□□□□ -0.62
SCN1A-208ENST00000625916 PLCD3Q8N3E9 789 aa11.17□□□□□ -0.62
SCN1A-208ENST00000625916 MS4A3Q96HJ5 214 aa11.1□□□□□ -0.63
SCN1A-208ENST00000625916 CCDC61Q9Y6R9 512 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms