RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 GLUD2P49448 558 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 VPS41P49754 854 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 DRG2P55039 364 aaKnown RBP10.92□□□□□ -0.66
SS18-217ENST00000580958 EIF3EP60228 445 aaKnown RBP10.92□□□□□ -0.66
SS18-217ENST00000580958 LMNB2Q03252 620 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 SMARCB1Q12824 385 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 DUSP4Q13115 394 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 EFHC2Q5JST6 749 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 SLC9A4Q6AI14 798 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 C1orf228Q6PIY5 440 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 ZDHHC24Q6UX98 284 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 BEND5Q7L4P6 421 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 GSTA5Q7RTV2 222 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 PRUNE1Q86TP1 453 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 PSTKQ8IV42 348 aaKnown RBP10.92□□□□□ -0.66
SS18-217ENST00000580958 ALLCQ8N6M5 410 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 NKD2Q969F2 451 aaPredicted RBP10.92□□□□□ -0.66
SS18-217ENST00000580958 NTAN1Q96AB6 310 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 PGAP3Q96FM1 320 aaPredicted RBP10.92□□□□□ -0.66
SS18-217ENST00000580958 CSPG4P5Q96PW8 444 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 SLC9A7Q96T83 725 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 FBXO44Q9H4M3 255 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 C10orf88Q9H8K7 445 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 ANLNQ9NQW6 1124 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 ABCC13Q9NSE7 274 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 ZDHHC18Q9NUE0 388 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.92□□□□□ -0.66
SS18-217ENST00000580958 IL37Q9NZH6 218 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 GRHL1Q9NZI5 618 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 GMIPQ9P107 970 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 NEU2Q9Y3R4 380 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 H3BRJ5 948 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 MCF2LO15068 1137 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 RTN3O95197 1032 aaPredicted RBP10.91□□□□□ -0.66
SS18-217ENST00000580958 F9P00740 461 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 IGLV3-25P01717 112 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 ITGAVP06756 1048 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 ETS1P14921 441 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 ATF2P15336 505 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 GOT1P17174 413 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 AMPD1P23109 780 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 KLRC2P26717 231 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 YWHAQP27348 245 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 GBP1P32455 592 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 ADRA1BP35368 520 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 ARL4AP40617 200 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 CXCR3P49682 368 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 PLTPP55058 493 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 RPL10AP62906 217 aaKnown RBP10.91□□□□□ -0.66
SS18-217ENST00000580958 DSG1Q02413 1049 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 MTMR3Q13615 1198 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 NOMO1Q15155 1222 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 TMEM240Q5SV17 173 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 SLC8B1Q6J4K2 584 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 DENND5BQ6ZUT9 1274 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 DDX53Q86TM3 631 aaKnown RBP10.91□□□□□ -0.66
SS18-217ENST00000580958 FIBCD1Q8N539 461 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 PLD5Q8N7P1 536 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 GLIS1Q8NBF1 620 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 TSEN2Q8NCE0 465 aaKnown RBP10.91□□□□□ -0.66
SS18-217ENST00000580958 GIPC2Q8TF65 315 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 AUTS2Q8WXX7 1259 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.91□□□□□ -0.66
SS18-217ENST00000580958 CASP10Q92851 521 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 FBXO32Q969P5 355 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 SNF8Q96H20 258 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 SPATA17Q96L03 361 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 CLSTN3Q9BQT9 956 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 OSER1Q9NX31 292 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 CWC15Q9P013 229 aaKnown RBP10.91□□□□□ -0.66
SS18-217ENST00000580958 FBXW11Q9UKB1 542 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 NUDT5Q9UKK9 219 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 HPCAL4Q9UM19 191 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 MFHAS1Q9Y4C4 1052 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 SNX10Q9Y5X0 201 aa10.91□□□□□ -0.66
SS18-217ENST00000580958 CARNS1A5YM72 827 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 SLC38A8A6NNN8 435 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 H7C0C1 242 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 I6L893 689 aaPredicted RBP10.9□□□□□ -0.66
SS18-217ENST00000580958 SGK1O00141 431 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 EEF2KO00418 725 aaKnown RBP10.9□□□□□ -0.66
SS18-217ENST00000580958 IRAK2O43187 625 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 CREB3O43889 395 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 GJB5O95377 273 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 SEC24AO95486 1093 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 URODP06132 367 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 ZSCAN5DPP0CG00 497 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 RBP3P10745 1247 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 SYN1P17600 705 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 ATF6P18850 670 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 IVDP26440 423 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 HSPA9P38646 679 aaKnown RBP10.9□□□□□ -0.66
SS18-217ENST00000580958 ADCY8P40145 1251 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 ATP5OP48047 213 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 AIF1P55008 147 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 HTRA4P83105 476 aaPredicted RBP10.9□□□□□ -0.66
SS18-217ENST00000580958 SCAPQ12770 1279 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 ARL13BQ3SXY8 428 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 MSANTD2Q6P1R3 559 aa10.9□□□□□ -0.66
SS18-217ENST00000580958 PSRC1Q6PGN9 363 aaPredicted RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms