RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 IFIT1BQ5T764 474 aaKnown RBP4.66□□□□□ -1.66
CD44-235ENST00000532339 ARHGAP40Q5TG30 622 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 KSR2Q6VAB6 950 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 USP38Q8NB14 1042 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 SLC35G2Q8TBE7 412 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 HPS3Q969F9 1004 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 DCPSQ96C86 337 aaKnown RBP4.66□□□□□ -1.66
CD44-235ENST00000532339 REPS1Q96D71 796 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 TAAR9Q96RI9 348 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 POLR3GLQ9BT43 218 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 THEGQ9P2T0 379 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 TRANK1O15050 2925 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 SPTBN4Q9H254 2564 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 COL4A5P29400 1685 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 SETXQ7Z333 2677 aaKnown RBP4.66□□□□□ -1.66
CD44-235ENST00000532339 CHD6Q8TD26 2715 aa4.66□□□□□ -1.66
CD44-235ENST00000532339 NPC1L1Q9UHC9 1359 aa4.65□□□□□ -1.66
CD44-235ENST00000532339 SNED1Q8TER0 1413 aa4.65□□□□□ -1.66
CD44-235ENST00000532339 CACNA1SQ13698 1873 aa4.65□□□□□ -1.66
CD44-235ENST00000532339 CFAP47Q6ZTR5 3102 aa4.65□□□□□ -1.66
CD44-235ENST00000532339 ZNF213O14771 459 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 GRPP07492 148 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 PRR35P0CG20 571 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 TRIM27P14373 513 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 NPR1P16066 1061 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 KELP23276 732 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 LIPAP38571 399 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 VIPR2P41587 438 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 CLCN2P51788 898 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 SSBP2P81877 361 aaPredicted RBP4.65□□□□□ -1.67
CD44-235ENST00000532339 E2F2Q14209 437 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 PCID2Q5JVF3 399 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 ATAT1Q5SQI0 421 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 SYCP2LQ5T4T6 812 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 ZNF425Q6IV72 752 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 OLFM4Q6UX06 510 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 C1GALT1C1Q96EU7 318 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 CDCA5Q96FF9 252 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 RPS6KC1Q96S38 1066 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 SARGQ9BW04 601 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 ZNF700Q9H0M5 742 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 GLOD4Q9HC38 313 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 NRIP3Q9NQ35 241 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 CNNM1Q9NRU3 951 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 DUSP22Q9NRW4 184 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 PCDHA6Q9UN73 950 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 SHOC2Q9UQ13 582 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 SSX2IPQ9Y2D8 614 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 SOS1Q07889 1333 aaPredicted RBP4.65□□□□□ -1.67
CD44-235ENST00000532339 KDM3BQ7LBC6 1761 aa4.65□□□□□ -1.67
CD44-235ENST00000532339 ANKRD26Q9UPS8 1709 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 AP1G1O43747 822 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 OFD1O75665 1012 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 ALDH2P05091 517 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 EPHB2P29323 1055 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 HOXC9P31274 260 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 PDE1AP54750 535 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 TUBA4AP68366 448 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 CXCL9Q07325 125 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 ARHGAP29Q52LW3 1261 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 PRAMEF17Q5VTA0 474 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 ZNF626Q68DY1 528 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 RGS7BPQ6MZT1 257 aaPredicted RBP4.64□□□□□ -1.67
CD44-235ENST00000532339 PARS2Q7L3T8 475 aaKnown RBP4.64□□□□□ -1.67
CD44-235ENST00000532339 NEK8Q86SG6 692 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 GRAMD1CQ8IYS0 662 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 LRRC71Q8N4P6 559 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 SVIPQ8NHG7 77 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 RP9Q8TA86 221 aaKnown RBP4.64□□□□□ -1.67
CD44-235ENST00000532339 ATG4AQ8WYN0 398 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 CGRRF1Q99675 332 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 WDR26Q9H7D7 661 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 XPR1Q9UBH6 696 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 CNOT7Q9UIV1 285 aaKnown RBP4.64□□□□□ -1.67
CD44-235ENST00000532339 ZMYND8Q9ULU4 1186 aaPredicted RBP4.64□□□□□ -1.67
CD44-235ENST00000532339 FAM205AQ6ZU69 1335 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 KTN1Q86UP2 1357 aaKnown RBP4.64□□□□□ -1.67
CD44-235ENST00000532339 TONSLQ96HA7 1378 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 RAB3GAP2Q9H2M9 1393 aa4.64□□□□□ -1.67
CD44-235ENST00000532339 FASNP49327 2511 aaKnown RBP4.64□□□□□ -1.67
CD44-235ENST00000532339 ZNF646O15015 1829 aaPredicted RBP4.63□□□□□ -1.67
CD44-235ENST00000532339 WDFY4Q6ZS81 3184 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 A6NNZ2 444 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 THP07101 528 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 FESP07332 822 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 NPSP0C0P6 89 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 CYP2C9P11712 490 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 ENGP17813 658 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 LRPAP1P30533 357 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 SP2Q02086 613 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 HDAC1Q13547 482 aaPredicted RBP4.63□□□□□ -1.67
CD44-235ENST00000532339 PPP4R4Q6NUP7 873 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 ZNF66Q6ZN08 573 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 CERS3Q8IU89 383 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 CNBD1Q8NA66 436 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 DIS3LQ8TF46 1054 aaKnown RBP4.63□□□□□ -1.67
CD44-235ENST00000532339 U2AF1L4Q8WU68 220 aaKnown RBP4.63□□□□□ -1.67
CD44-235ENST00000532339 GLG1Q92896 1179 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 FSD1LQ9BXM9 530 aa4.63□□□□□ -1.67
CD44-235ENST00000532339 ARMT1Q9H993 441 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms