RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 AEBP2Q6ZN18 517 aaPredicted RBP24.13■■□□□ 1.45
CD44-235ENST00000532339 CHIC1Q5VXU3 224 aa23.28■■□□□ 1.32
CD44-235ENST00000532339 SENP3Q9H4L4 574 aaPredicted RBP20.6■□□□□ 0.89
CD44-235ENST00000532339 PHF23Q9BUL5 403 aaPredicted RBP20.4■□□□□ 0.86
CD44-235ENST00000532339 FOXD1Q16676 465 aa19.12■□□□□ 0.65
CD44-235ENST00000532339 PLPPR3Q6T4P5 718 aa18.78■□□□□ 0.6
CD44-235ENST00000532339 PPP6R1Q9UPN7 881 aa18.1■□□□□ 0.49
CD44-235ENST00000532339 ADRA2BP18089 450 aa18.08■□□□□ 0.48
CD44-235ENST00000532339 PIAS4Q8N2W9 510 aaPredicted RBP17.97■□□□□ 0.47
CD44-235ENST00000532339 MSH5O43196 834 aa17.82■□□□□ 0.44
CD44-235ENST00000532339 POTEDQ86YR6 584 aa16.78■□□□□ 0.28
CD44-235ENST00000532339 SCAF1Q9H7N4 1312 aaKnown RBP16.63■□□□□ 0.25
CD44-235ENST00000532339 MAPK8IP2Q13387 824 aaPredicted RBP16.49■□□□□ 0.23
CD44-235ENST00000532339 PPP4R3CPQ6ZMV5 832 aa16.49■□□□□ 0.23
CD44-235ENST00000532339 DMRT2Q9Y5R5 561 aa16.38■□□□□ 0.21
CD44-235ENST00000532339 CNKSR2Q8WXI2 1034 aa16.12■□□□□ 0.17
CD44-235ENST00000532339 NCBP3Q53F19 620 aaKnown RBP16■□□□□ 0.15
CD44-235ENST00000532339 HOXD11P31277 338 aaPredicted RBP15.9■□□□□ 0.14
CD44-235ENST00000532339 RNF216Q9NWF9 866 aaPredicted RBP15.88■□□□□ 0.13
CD44-235ENST00000532339 NPM3O75607 178 aaKnown RBP15.71■□□□□ 0.11
CD44-235ENST00000532339 DCAF8L1A6NGE4 600 aa15.69■□□□□ 0.1
CD44-235ENST00000532339 KCNA4P22459 653 aa15.69■□□□□ 0.1
CD44-235ENST00000532339 DNAJC5BQ9UF47 199 aa15.34■□□□□ 0.05
CD44-235ENST00000532339 RNF39Q9H2S5 420 aa15.2■□□□□ 0.02
CD44-235ENST00000532339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.17■□□□□ 0.02
CD44-235ENST00000532339 CACNB1Q02641 598 aaPredicted RBP15.07■□□□□ 0
CD44-235ENST00000532339 C1QBPQ07021 282 aaKnown RBP15.03■□□□□ -0
CD44-235ENST00000532339 SLC4A1APQ9BWU0 796 aaKnown RBP14.91□□□□□ -0.02
CD44-235ENST00000532339 SLC4A2P04920 1241 aa14.9□□□□□ -0.02
CD44-235ENST00000532339 U3KPZ7 1027 aaPredicted RBP14.85□□□□□ -0.03
CD44-235ENST00000532339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.62□□□□□ -0.07
CD44-235ENST00000532339 HNRNPUL2Q1KMD3 747 aaKnown RBP14.62□□□□□ -0.07
CD44-235ENST00000532339 APLP2Q06481 763 aa14.57□□□□□ -0.08
CD44-235ENST00000532339 FOXD4L1Q9NU39 408 aa14.57□□□□□ -0.08
CD44-235ENST00000532339 MYCNP04198 464 aaPredicted RBP14.56□□□□□ -0.08
CD44-235ENST00000532339 SAMD1Q6SPF0 538 aaPredicted RBP14.53□□□□□ -0.08
CD44-235ENST00000532339 SPINK5Q9NQ38 1064 aaPredicted RBP14.53□□□□□ -0.08
CD44-235ENST00000532339 CAPN15O75808 1086 aa14.52□□□□□ -0.09
CD44-235ENST00000532339 ZBTB22O15209 634 aa14.41□□□□□ -0.1
CD44-235ENST00000532339 ZNF219Q9P2Y4 722 aaPredicted RBP14.38□□□□□ -0.11
CD44-235ENST00000532339 TRHP20396 242 aaPredicted RBP14.36□□□□□ -0.11
CD44-235ENST00000532339 DSG3P32926 999 aa14.34□□□□□ -0.11
CD44-235ENST00000532339 ABCB7O75027 752 aa14.2□□□□□ -0.14
CD44-235ENST00000532339 ATXN8OSP0DMR3 200 aa14.13□□□□□ -0.15
CD44-235ENST00000532339 ATF5Q9Y2D1 282 aaPredicted RBP14.13□□□□□ -0.15
CD44-235ENST00000532339 EHMT2Q96KQ7 1210 aa14.07□□□□□ -0.16
CD44-235ENST00000532339 CSRNP3Q8WYN3 585 aa14.06□□□□□ -0.16
CD44-235ENST00000532339 POLA2Q14181 598 aa14.05□□□□□ -0.16
CD44-235ENST00000532339 ZBTB12Q9Y330 459 aaPredicted RBP13.85□□□□□ -0.19
CD44-235ENST00000532339 RBM42Q9BTD8 480 aaKnown RBP13.73□□□□□ -0.21
CD44-235ENST00000532339 FBLN2P98095 1184 aa13.64□□□□□ -0.23
CD44-235ENST00000532339 OSCARQ8IYS5 282 aa13.58□□□□□ -0.24
CD44-235ENST00000532339 MKRN4PQ13434 485 aaPredicted RBP13.51□□□□□ -0.25
CD44-235ENST00000532339 AKT1S1Q96B36 256 aa13.47□□□□□ -0.25
CD44-235ENST00000532339 SPDYE2BA6NHP3 402 aa13.42□□□□□ -0.26
CD44-235ENST00000532339 SPDYE6P0CI01 402 aa13.42□□□□□ -0.26
CD44-235ENST00000532339 SPDYE2Q495Y8 402 aa13.42□□□□□ -0.26
CD44-235ENST00000532339 REM2Q8IYK8 340 aaPredicted RBP13.32□□□□□ -0.28
CD44-235ENST00000532339 ZNF692Q9BU19 519 aaPredicted RBP13.3□□□□□ -0.28
CD44-235ENST00000532339 CHRDL2Q6WN34 429 aa13.26□□□□□ -0.29
CD44-235ENST00000532339 SSUH2Q9Y2M2 353 aa13.26□□□□□ -0.29
CD44-235ENST00000532339 POTEHQ6S545 545 aa13.23□□□□□ -0.29
CD44-235ENST00000532339 PITPNM1O00562 1244 aa13.17□□□□□ -0.3
CD44-235ENST00000532339 PABPN1Q86U42 306 aaKnown RBP eCLIP13.11□□□□□ -0.31
CD44-235ENST00000532339 SPDYE1Q8NFV5 336 aaPredicted RBP13.11□□□□□ -0.31
CD44-235ENST00000532339 SPDYE4A6NLX3 237 aa13.08□□□□□ -0.32
CD44-235ENST00000532339 CLEC11AQ9Y240 323 aa13.05□□□□□ -0.32
CD44-235ENST00000532339 PIP4P2Q8N4L2 257 aa13.01□□□□□ -0.33
CD44-235ENST00000532339 FXR2P51116 673 aaKnown RBP eCLIP12.99□□□□□ -0.33
CD44-235ENST00000532339 PRR29P0C7W0 189 aa12.89□□□□□ -0.35
CD44-235ENST00000532339 STAG3Q9UJ98 1225 aa12.87□□□□□ -0.35
CD44-235ENST00000532339 PRKAR2AP13861 404 aaKnown RBP12.84□□□□□ -0.35
CD44-235ENST00000532339 PROM2Q8N271 834 aa12.8□□□□□ -0.36
CD44-235ENST00000532339 FKBP8Q14318 412 aa12.75□□□□□ -0.37
CD44-235ENST00000532339 CHADLQ6NUI6 762 aa12.74□□□□□ -0.37
CD44-235ENST00000532339 HAX1O00165 279 aa12.7□□□□□ -0.38
CD44-235ENST00000532339 CREBZFQ9NS37 354 aa12.62□□□□□ -0.39
CD44-235ENST00000532339 FARP1Q9Y4F1 1045 aaPredicted RBP12.61□□□□□ -0.39
CD44-235ENST00000532339 C19orf67A6NJJ6 358 aa12.56□□□□□ -0.4
CD44-235ENST00000532339 SP7Q8TDD2 431 aaPredicted RBP12.56□□□□□ -0.4
CD44-235ENST00000532339 EVX2Q03828 476 aa12.5□□□□□ -0.41
CD44-235ENST00000532339 PLEKHG5O94827 1062 aa12.46□□□□□ -0.41
CD44-235ENST00000532339 NPM1P06748 294 aaKnown RBP eCLIP12.46□□□□□ -0.41
CD44-235ENST00000532339 CD44P16070 742 aaKnown RBP12.46□□□□□ -0.41
CD44-235ENST00000532339 MIER1Q8N108 512 aa12.45□□□□□ -0.42
CD44-235ENST00000532339 FBXO3Q9UK99 471 aa12.45□□□□□ -0.42
CD44-235ENST00000532339 MNX1P50219 401 aaPredicted RBP12.44□□□□□ -0.42
CD44-235ENST00000532339 PLCD3Q8N3E9 789 aa12.4□□□□□ -0.42
CD44-235ENST00000532339 PAK3O75914 559 aaPredicted RBP12.35□□□□□ -0.43
CD44-235ENST00000532339 ZRANB1Q9UGI0 708 aa12.33□□□□□ -0.44
CD44-235ENST00000532339 ZBTB47Q9UFB7 747 aaPredicted RBP12.32□□□□□ -0.44
CD44-235ENST00000532339 GABBR2O75899 941 aa12.29□□□□□ -0.44
CD44-235ENST00000532339 CLCN6P51797 869 aa12.28□□□□□ -0.44
CD44-235ENST00000532339 ZNF579Q8NAF0 562 aaKnown RBP12.28□□□□□ -0.44
CD44-235ENST00000532339 VASPP50552 380 aaPredicted RBP12.25□□□□□ -0.45
CD44-235ENST00000532339 TSPYL2Q9H2G4 693 aaPredicted RBP12.2□□□□□ -0.46
CD44-235ENST00000532339 RASEFQ8IZ41 740 aa12.16□□□□□ -0.46
CD44-235ENST00000532339 PHF12Q96QT6 1004 aa12.16□□□□□ -0.46
CD44-235ENST00000532339 NUBP1P53384 320 aa12.14□□□□□ -0.47
CD44-235ENST00000532339 KLHL34Q8N239 644 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms