RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 AASDHQ4L235 1098 aaPredicted RBP19.42■□□□□ 0.7
COL7A1-209ENST00000474432 NUDT18Q6ZVK8 323 aa19.42■□□□□ 0.7
COL7A1-209ENST00000474432 TRMT11Q7Z4G4 463 aaKnown RBP19.42■□□□□ 0.7
COL7A1-209ENST00000474432 FMNL3Q8IVF7 1028 aa19.42■□□□□ 0.7
COL7A1-209ENST00000474432 CLEC4CQ8WTT0 213 aa19.42■□□□□ 0.7
COL7A1-209ENST00000474432 PLD4Q96BZ4 506 aa19.42■□□□□ 0.7
COL7A1-209ENST00000474432 INTS2Q9H0H0 1204 aaKnown RBP19.42■□□□□ 0.7
COL7A1-209ENST00000474432 STOML2Q9UJZ1 356 aa19.42■□□□□ 0.7
COL7A1-209ENST00000474432 STRIP2Q9ULQ0 834 aa19.42■□□□□ 0.7
COL7A1-209ENST00000474432 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.42■□□□□ 0.7
COL7A1-209ENST00000474432 WASH3PC4AMC7 463 aa19.41■□□□□ 0.7
COL7A1-209ENST00000474432 PIK3R2O00459 728 aa19.41■□□□□ 0.7
COL7A1-209ENST00000474432 LCP1P13796 627 aa19.41■□□□□ 0.7
COL7A1-209ENST00000474432 RPL34P49207 117 aaKnown RBP19.41■□□□□ 0.7
COL7A1-209ENST00000474432 STPG1Q5TH74 334 aa19.41■□□□□ 0.7
COL7A1-209ENST00000474432 MSANTD2Q6P1R3 559 aa19.41■□□□□ 0.7
COL7A1-209ENST00000474432 SIX6OS1Q8N1H7 587 aa19.41■□□□□ 0.7
COL7A1-209ENST00000474432 C12orf50Q8NA57 414 aaPredicted RBP19.41■□□□□ 0.7
COL7A1-209ENST00000474432 IPO4Q8TEX9 1081 aaKnown RBP19.41■□□□□ 0.7
COL7A1-209ENST00000474432 IPO9Q96P70 1041 aaKnown RBP19.41■□□□□ 0.7
COL7A1-209ENST00000474432 ABCC13Q9NSE7 274 aa19.41■□□□□ 0.7
COL7A1-209ENST00000474432 OLA1Q9NTK5 396 aaKnown RBP19.41■□□□□ 0.7
COL7A1-209ENST00000474432 CACNA2D2Q9NY47 1150 aa19.41■□□□□ 0.7
COL7A1-209ENST00000474432 BCCIPQ9P287 314 aaKnown RBP eCLIP19.41■□□□□ 0.7
COL7A1-209ENST00000474432 RWDD2AQ9UIY3 292 aa19.41■□□□□ 0.7
COL7A1-209ENST00000474432 HBS1LQ9Y450 684 aaKnown RBP19.41■□□□□ 0.7
COL7A1-209ENST00000474432 RAD54BQ9Y620 910 aa19.41■□□□□ 0.7
COL7A1-209ENST00000474432 PI4KAP42356 2102 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 PATE3B3GLJ2 98 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 M0QYV0 167 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 MSI1O43347 362 aaKnown RBP19.4■□□□□ 0.7
COL7A1-209ENST00000474432 FYNP06241 537 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 PTGER3P43115 390 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 GPD2P43304 727 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 CETN1Q12798 172 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 ENPP2Q13822 863 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 TMEM215Q68D42 235 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 CHPFQ8IZ52 775 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 IRGQQ8WZA9 623 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 ERLEC1Q96DZ1 483 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 CHMP5Q9NZZ3 219 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 CALCOCO1Q9P1Z2 691 aa19.4■□□□□ 0.7
COL7A1-209ENST00000474432 CKAP5Q14008 2032 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 IGLV3-27P01718 113 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 NDUFV2P19404 249 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 APBA1Q02410 837 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 STILQ15468 1287 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 GJB7Q6PEY0 223 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 TMEFF1Q8IYR6 380 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 PGBD3Q8N328 593 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 HSFY1Q96LI6 401 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 SLC6A17Q9H1V8 727 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 ACP6Q9NPH0 428 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 CD93Q9NPY3 652 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 TMEM74BQ9NUR3 256 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 THAP10Q9P2Z0 257 aaPredicted RBP19.39■□□□□ 0.69
COL7A1-209ENST00000474432 STON1Q9Y6Q2 735 aa19.39■□□□□ 0.69
COL7A1-209ENST00000474432 LNP1A1A4G5 178 aa19.38■□□□□ 0.69
COL7A1-209ENST00000474432 BECN2A8MW95 431 aa19.38■□□□□ 0.69
COL7A1-209ENST00000474432 HOXD9P28356 352 aaPredicted RBP19.38■□□□□ 0.69
COL7A1-209ENST00000474432 DHPSP49366 369 aaPredicted RBP19.38■□□□□ 0.69
COL7A1-209ENST00000474432 PPM1JQ5JR12 505 aa19.38■□□□□ 0.69
COL7A1-209ENST00000474432 DENND1BQ6P3S1 775 aa19.38■□□□□ 0.69
COL7A1-209ENST00000474432 RNF139Q8WU17 664 aa19.38■□□□□ 0.69
COL7A1-209ENST00000474432 CRACR2AQ9BSW2 395 aa19.38■□□□□ 0.69
COL7A1-209ENST00000474432 UBE2TQ9NPD8 197 aaPredicted RBP19.38■□□□□ 0.69
COL7A1-209ENST00000474432 CYTH4Q9UIA0 394 aa19.38■□□□□ 0.69
COL7A1-209ENST00000474432 MUC22E2RYF6 1773 aaPredicted RBP19.37■□□□□ 0.69
COL7A1-209ENST00000474432 IGHV1OR15-9A0A0B4J2B8 117 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 LTFP02788 710 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 SLC9A1P19634 815 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 IL12RB1P42701 662 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 SGSHP51688 502 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 RNF43Q68DV7 783 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 TRIM65Q6PJ69 517 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 LPCAT2Q7L5N7 544 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 CYP2U1Q7Z449 544 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 SPACA7Q96KW9 195 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 MRGPRX1Q96LB2 322 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 SLC2A11Q9BYW1 496 aa19.37■□□□□ 0.69
COL7A1-209ENST00000474432 TPRP12270 2363 aaKnown RBP19.36■□□□□ 0.69
COL7A1-209ENST00000474432 CDX4O14627 284 aaPredicted RBP19.36■□□□□ 0.69
COL7A1-209ENST00000474432 TSPAN3O60637 253 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 LATS1O95835 1130 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 CYBBP04839 570 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 ADRB1P08588 477 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 HARS2P49590 506 aaKnown RBP19.36■□□□□ 0.69
COL7A1-209ENST00000474432 IRX4P78413 519 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 MPPE1Q53F39 396 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 SPDYCQ5MJ68 293 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 ADGRF1Q5T601 910 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 PEAR1Q5VY43 1037 aaPredicted RBP19.36■□□□□ 0.69
COL7A1-209ENST00000474432 SDE2Q6IQ49 451 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 ARMCX6Q7L4S7 300 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 KIAA0907Q7Z7F0 614 aaPredicted RBP19.36■□□□□ 0.69
COL7A1-209ENST00000474432 SCUBE3Q8IX30 993 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 DDI1Q8WTU0 396 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 ZNF606Q8WXB4 792 aa19.36■□□□□ 0.69
COL7A1-209ENST00000474432 SORCS1Q8WY21 1168 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms