RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TNS2Q63HR2 1409 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 OTOAQ7RTW8 1153 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 MREGQ8N565 214 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 CCL15-CCL14A0A0B4J2E2 113 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 KRT87PA6NCN2 255 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 SRRM3A6NNA2 597 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-210ENST00000487017 FAM58BPP0C7Q3 252 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 CCL15Q16663 113 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 AGKQ53H12 422 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 SLC30A10Q6XR72 485 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 LRRC8DQ7L1W4 858 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 MSL3Q8N5Y2 521 aaKnown RBP16.89■□□□□ 0.29
COL7A1-210ENST00000487017 STK32AQ8WU08 396 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 MMADHCQ9H3L0 296 aaPredicted RBP16.89■□□□□ 0.29
COL7A1-210ENST00000487017 IMPAD1Q9NX62 359 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 TSPAN16Q9UKR8 245 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 WDR27A2RRH5 827 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 F5H5T6 163 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 ARL4DP49703 201 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 CSE1LP55060 971 aaKnown RBP16.89■□□□□ 0.29
COL7A1-210ENST00000487017 WDR59Q6PJI9 974 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 NUDT18Q6ZVK8 323 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 GDPD5Q8WTR4 605 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 CATSPER2Q96P56 530 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 NEURL4Q96JN8 1562 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 DPEP1P16444 411 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 CCDC142Q17RM4 750 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 ATP6AP1LQ52LC2 224 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 ETNPPLQ8TBG4 499 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 ELMO3Q96BJ8 720 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 PAPOLBQ9NRJ5 636 aaKnown RBP16.89■□□□□ 0.29
COL7A1-210ENST00000487017 TSC22D4Q9Y3Q8 395 aa16.89■□□□□ 0.29
COL7A1-210ENST00000487017 BTNL10A8MVZ5 291 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 KLRC4O43908 158 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 CBX6O95503 412 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 HIST2H2ACQ16777 129 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-210ENST00000487017 HIST2H2AA3Q6FI13 130 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 LRRC74BQ6ZQY2 392 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 C11orf96Q7Z7L8 435 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 VTI1BQ9UEU0 232 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 MEI4A8MW99 385 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 EML1O00423 815 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 MAPK1P28482 360 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 MZF1P28698 734 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-210ENST00000487017 CENPAP49450 140 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 PWP1Q13610 501 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 METTL7BQ6UX53 244 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 C3orf67Q6ZVT6 689 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 ZDHHC17Q8IUH5 632 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 KCNQ5Q9NR82 932 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 RAD54BQ9Y620 910 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 SPATA31A6Q5VVP1 1343 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 GCLCP48506 637 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-210ENST00000487017 PRKAA2P54646 552 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 SPANXN3Q5MJ09 141 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 FAM117BQ6P1L5 589 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 FBXO16Q8IX29 292 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-210ENST00000487017 DIS3LQ8TF46 1054 aaKnown RBP16.88■□□□□ 0.29
COL7A1-210ENST00000487017 TBC1D13Q9NVG8 400 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 CACNA2D2Q9NY47 1150 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 TUBGCP4Q9UGJ1 667 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 A0A087WZ62 844 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 B3GAT3O94766 335 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 MICAL2O94851 1124 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 FAAP100Q0VG06 881 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 MAP4K3Q8IVH8 894 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 ZSWIM2Q8NEG5 633 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 HTR3CQ8WXA8 447 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 CPNE1Q99829 537 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 FDXACB1Q9BRP7 624 aaPredicted RBP16.88■□□□□ 0.29
COL7A1-210ENST00000487017 SPASTQ9UBP0 616 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 SATB2Q9UPW6 733 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 CAPZA2P47755 286 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 NR2C2P49116 596 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 PPATQ06203 517 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 CYP51A1Q16850 503 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 GNASQ5JWF2 1037 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 DNERQ8NFT8 737 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 RAET1EQ8TD07 263 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 PPP1R10Q96QC0 940 aaKnown RBP16.88■□□□□ 0.29
COL7A1-210ENST00000487017 TMEM79Q9BSE2 394 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 SPATA16Q9BXB7 569 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 PDGFCQ9NRA1 345 aa16.88■□□□□ 0.29
COL7A1-210ENST00000487017 GLP2RO95838 553 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 LHX1P48742 406 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 PRIM2P49643 509 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 NDST1P52848 882 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 RRP1BQ14684 758 aaKnown RBP16.87■□□□□ 0.29
COL7A1-210ENST00000487017 FAM9CQ8IZT9 166 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 CKAP2Q8WWK9 683 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 C6orf203Q9P0P8 240 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-210ENST00000487017 PRG3Q9Y2Y8 225 aaPredicted RBP16.87■□□□□ 0.29
COL7A1-210ENST00000487017 TRIM13O60858 407 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 TPBGLP0DKB5 382 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 ADRA1DP25100 572 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 ALDH1A3P47895 512 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 TKTL1P51854 596 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 CDH17Q12864 832 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 CDH18Q13634 790 aa16.87■□□□□ 0.29
COL7A1-210ENST00000487017 TCHHL1Q5QJ38 904 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms